PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn049811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 210aa    MW: 22974.5 Da    PI: 4.7066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn049811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-174795254
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a ++++
  Achn049811 47 IYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYATPEMAARAHDVATLSIK 95
                69****998.**********843...6*******************9977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-124695IPR001471AP2/ERF domain
CDDcd000185.43E-3146104No hitNo description
SuperFamilySSF541717.19E-2147105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-3047105IPR001471AP2/ERF domain
SMARTSM003809.0E-3647110IPR001471AP2/ERF domain
PROSITE profilePS5103222.5147104IPR001471AP2/ERF domain
PRINTSPR003675.5E-104859IPR001471AP2/ERF domain
PRINTSPR003675.5E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAEISVSFSS PESSSESTHS QSNSPKTQNP EGNRPKRPRE RNNKHPIYRG VRMRSWGKWV  60
SEIREPRKKS RIWLGTYATP EMAARAHDVA TLSIKGDSAI LNFPQLTESL PRPASLSPPD  120
IQAAAAKAAA MEHLSPLASS SSDESIVTTT TSSEELGEII ELPSLEGDFD SAELVLIDSV  180
DGWLDFDFFG YYSDQTVVAD SMIPSNLYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18451051273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097122.14e-85ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-55DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2R6QZX51e-149A0A2R6QZX5_ACTCH; Dehydration-responsive element-binding protein
STRINGGorai.003G063500.17e-68(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]