PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn049251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 159aa    MW: 17358.3 Da    PI: 4.3654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn049251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-191362255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr++  +g+WvAeIr+p+      +r +lg+f+t  eAa a++aa++kl+g
  Achn049251 13 TYKGVRQRT-WGKWVAEIREPK----GgARLWLGTFDTSREAAIAYDAAARKLYG 62
                69****999.**********94....24*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.38E-221272No hitNo description
Gene3DG3DSA:3.30.730.101.8E-291371IPR001471AP2/ERF domain
PROSITE profilePS5103222.261370IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-211370IPR016177DNA-binding domain
SMARTSM003807.8E-351376IPR001471AP2/ERF domain
PfamPF008478.4E-141362IPR001471AP2/ERF domain
PRINTSPR003676.5E-101425IPR001471AP2/ERF domain
PRINTSPR003676.5E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRGKGGPENA ACTYKGVRQR TWGKWVAEIR EPKGGARLWL GTFDTSREAA IAYDAAARKL  60
YGPEAVLNLP ELCTPPIGIH LVTNEVRTQQ SSVGTNVSSS ESVGENEMGI DTIWENLNAN  120
FPDFDDSSMW AEAGASMDFQ AMTDSGIFFE DGMHPWCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181470663ATERF1
3gcc_A2e-181470663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079113.13e-55dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ23e-47DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2R6RMP51e-115A0A2R6RMP5_ACTCH; Dehydration-responsive element-binding protein like
STRINGBostr.3288s0201.1.p2e-48(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]