PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn049161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TALE | ||||||||
Protein Properties | Length: 319aa MW: 35085.1 Da PI: 6.2875 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.9e-09 | 109 | 146 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e++ LA+k gLt +qV +WF N R + Achn049161 109 FEHflHPYPKVSEKTMLARKAGLTRSQVANWFINARVR 146 664459******************************88 PP | |||||||
2 | BELL | 67.6 | 2.4e-22 | 1 | 43 | 30 | 72 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +q+v+ssF++vag+g+akpYt+lAlk+iSrhFr+L dai++qi Achn049161 1 MQIVVSSFDVVAGHGAAKPYTTLALKTISRHFRSLHDAISSQI 43 9*****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 5.0E-16 | 1 | 40 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 87 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.19E-12 | 90 | 151 | No hit | No description |
SMART | SM00389 | 1.6E-8 | 90 | 154 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 91 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 93 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.7E-16 | 107 | 146 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MQIVVSSFDV VAGHGAAKPY TTLALKTISR HFRSLHDAIS SQIRVTQKNL GEQDSTPSVQ 60 GGLPRLRYVG QQLGQQRALL QQFGVMRHSW RPQRGLPESS VSVLRAWLFE HFLHPYPKVS 120 EKTMLARKAG LTRSQVANWF INARVRLWKP MVEEMYKEEF GEIDFKSSPE HAPEEARDKS 180 WTSEDTGEAA DDGQIGQFDD SKSDLIPDFG MQGFTARLGF QNAACGDNKF GSGMTKLHGD 240 QRPNTDNHDV SPDGIFPLDQ TGDGNSNFSE LGSFSVGKQV SLALGFQHCE KDSLFVSGGV 300 QFSGDLTVAS SMSHDSSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-16 | 96 | 154 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-16 | 96 | 154 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 7e-16 | 96 | 153 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-16 | 96 | 153 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-16 | 96 | 154 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-16 | 96 | 154 | 1 | 59 | Homeobox protein Meis2 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028098118.1 | 1e-163 | BEL1-like homeodomain protein 6 | ||||
Refseq | XP_028098119.1 | 1e-163 | BEL1-like homeodomain protein 6 | ||||
Swissprot | Q9SIW1 | 2e-77 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A2R6RMS0 | 0.0 | A0A2R6RMS0_ACTCH; BEL1-like homeodomain protein 6 | ||||
STRING | EOY14863 | 1e-111 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11258 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-72 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
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