PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn047241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 283aa    MW: 31570.6 Da    PI: 7.3031
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn047241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+v+++G g+W++ ++  g++R +k+c++rw +yl
       Achn047241 16 KGPWTPEEDQKLVDYVQKHGHGSWRALPKLAGLNRGGKSCRLRWTNYL 63
                     79********************************************97 PP

2Myb_DNA-binding52.21.4e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ ++++++ lG++ W++Ia  ++ gRt++++k++w++++
       Achn047241  69 RGNFSDEEEQVIINLHAVLGNK-WSAIATQLP-GRTDNEIKNFWNTHR 114
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9691163IPR017930Myb domain
SuperFamilySSF466897.49E-3213110IPR009057Homeodomain-like
SMARTSM007172.4E-151565IPR001005SANT/Myb domain
PfamPF002499.1E-181663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-251770IPR009057Homeodomain-like
CDDcd001674.21E-121863No hitNo description
PROSITE profilePS5129426.14864118IPR017930Myb domain
SMARTSM007172.6E-1468116IPR001005SANT/Myb domain
PfamPF002499.8E-1569114IPR001005SANT/Myb domain
CDDcd001677.78E-1171113No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2671118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGRSPSGEEN VVGLKKGPWT PEEDQKLVDY VQKHGHGSWR ALPKLAGLNR GGKSCRLRWT  60
NYLRPDIKRG NFSDEEEQVI INLHAVLGNK WSAIATQLPG RTDNEIKNFW NTHRRKKLRQ  120
MGIDAVTHRP RTDLNLLTNL PQLLAAATSL GNPIVNPWDN ALRLHTDATV QLPKTYLLHN  180
ILQVLSTSSS APPPTTEALN FLGSVPLFDQ HQFCEYLPGT GNSLPALISV SPECSTVNQL  240
MENKINPTEH ISNPSSTSTN LEAWEKLMED EAGDSYWRQI TE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141185108B-MYB
1h8a_C2e-291411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634006.11e-124PREDICTED: transcription factor MYB39
SwissprotQ9SBF35e-79MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2R6QPN11e-160A0A2R6QPN1_ACTCH; Transcription factor like
STRINGVIT_16s0039g01710.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-88myb domain protein 107
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]