PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn047241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 31570.6 Da PI: 7.3031 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.9 | 2.6e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+v+++G g+W++ ++ g++R +k+c++rw +yl Achn047241 16 KGPWTPEEDQKLVDYVQKHGHGSWRALPKLAGLNRGGKSCRLRWTNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ ++++++ lG++ W++Ia ++ gRt++++k++w++++ Achn047241 69 RGNFSDEEEQVIINLHAVLGNK-WSAIATQLP-GRTDNEIKNFWNTHR 114 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.969 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-32 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-15 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-25 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.21E-12 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.148 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.78E-11 | 71 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-26 | 71 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MGRSPSGEEN VVGLKKGPWT PEEDQKLVDY VQKHGHGSWR ALPKLAGLNR GGKSCRLRWT 60 NYLRPDIKRG NFSDEEEQVI INLHAVLGNK WSAIATQLPG RTDNEIKNFW NTHRRKKLRQ 120 MGIDAVTHRP RTDLNLLTNL PQLLAAATSL GNPIVNPWDN ALRLHTDATV QLPKTYLLHN 180 ILQVLSTSSS APPPTTEALN FLGSVPLFDQ HQFCEYLPGT GNSLPALISV SPECSTVNQL 240 MENKINPTEH ISNPSSTSTN LEAWEKLMED EAGDSYWRQI TE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 14 | 118 | 5 | 108 | B-MYB |
1h8a_C | 2e-29 | 14 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003634006.1 | 1e-124 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9SBF3 | 5e-79 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A2R6QPN1 | 1e-160 | A0A2R6QPN1_ACTCH; Transcription factor like | ||||
STRING | VIT_16s0039g01710.t01 | 1e-123 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02940.1 | 5e-88 | myb domain protein 107 |
Publications ? help Back to Top | |||
---|---|---|---|
|