PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn046551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 280aa    MW: 30948.4 Da    PI: 9.3481
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn046551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85e-25135179145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Achn046551 135 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 179
                 79****************************************986 PP
2QLQ66.46.9e-231450137
         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                s+FT +Q+q+L++Q+l++KyL+a+ PvPp+Ll++iqk
  Achn046551 14 SPFTGSQWQELEHQALIFKYLMAGIPVPPHLLLPIQK 50
                89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-141450IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-161549IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.361550IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762135179IPR014977WRC domain
PfamPF088793.0E-21136178IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVAAEGEGIR SSSSPFTGSQ WQELEHQALI FKYLMAGIPV PPHLLLPIQK SFHAVSTAFF  60
NDPSSNTTNS LLISFLDCDL MVQKLSDDIS AKLAMVLWSS SLVIIILLPA MKYPICYLQV  120
TFAVGYCSLY GKKVDPEPGR CRRTDGKKWR CSKDAYPDSK YCERHMHRGR NRSRKPVESQ  180
VVSQSSSSTV TSLAVTEINS SSSGAGSFQN LPLHTFGNSQ GPSAGSNQFQ LHLESIPYGV  240
PHKDYRQIRL NKKIQKDNWS LSQLFASTGS FNAFALLIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824881e-60FQ382488.1 Vitis vinifera clone SS0ABG55YD19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022719891.14e-85growth-regulating factor 4-like
TrEMBLA0A2R6QPM61e-95A0A2R6QPM6_ACTCH; Growth-regulating factor like (Fragment)
STRINGEOY102031e-82(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-37growth-regulating factor 5