PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn044861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22862.2 Da PI: 4.5552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 42 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++k+ g+Wv+eIr+p r r++lg+f t+e+Aa a++ a+++l+g Achn044861 42 PVYRGVRRRKSGGKWVSEIREP-----RspNRIWLGTFPTPEMAAVAYDVAALALRG 93 68*******************9.....4489************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-12 | 42 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-29 | 43 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 43 | 103 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-35 | 43 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.827 | 43 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-30 | 44 | 103 | No hit | No description |
PRINTS | PR00367 | 2.1E-9 | 83 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQHLLYNLMY HSSNTSSCGS GRSDTVLCQS DLGSARVSGK HPVYRGVRRR KSGGKWVSEI 60 REPRSPNRIW LGTFPTPEMA AVAYDVAALA LRGSEAELNF PNSASSLPVP ASTAARDIQM 120 AAASAAAAAG AAVDAFSGSR NDDQDKYGTS QQSEDPIRYN EFVDEDLIFD MPNVLVNMAQ 180 GMLLSPPRYD FADEDTGDEN TEDQNLWKFS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 31 | 102 | 2 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028069670.1 | 3e-75 | ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 9e-57 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A2R6PXP1 | 1e-140 | A0A2R6PXP1_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | XP_009353175.1 | 4e-73 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-47 | ERF family protein |