PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn044611

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 544aa MW: 62070.1 Da PI: 9.6269

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn044611	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.8	6.6e-17	55	141	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA++ GF + ++++k+ +++g+i+ +t C + gk++ ++k+ + ++t+++Cka+++v+ +dg+ +++ + leHnHe++p Achn044611 55 DFYKKYAYNHGFGIITRSTKT-DDDGNIKYYTISCARAGKTNLTRKN---PLLPLPSTKINCKARINVRTFEDGRLCLSGVFLEHNHEFSP 141 6**********98877655.59999************9988...889*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-14	55	141	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50833	23.617	272	482	IPR007109	Brix domain
SMART	SM00879	2.6E-35	275	476	IPR007109	Brix domain
Pfam	PF04427	5.2E-31	279	474	IPR007109	Brix domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MSQLEMENQE VCFDEDTSTR EETREQQLQT TINEEEKVGT PQVGMMFNSI DEFHDFYKKY 60 AYNHGFGIIT RSTKTDDDGN IKYYTISCAR AGKTNLTRKN PLLPLPSTKI NCKARINVRT 120 FEDGRLCLSG VFLEHNHEFS PGKSRHFLCN KQLDSWAKRI LDLNDQAGIP LSKNFHSLVV 180 EARGYENLTF GEKECRNYID KARRLILGVG DAESLYNYFV IVQSNLSKYV ITKNYALCRI 240 LVGIMSQIKT PQKGRVRRVI QKRAPKLVEN GKKTLILHGT RTSDVLNAVL SEIYHLKKDD 300 SVKYSRRNDN IRPFESGGET SLEYFSLKTD CSLFVFGSHT KKRPNNLVMG RTYDHHIYDL 360 VELGVENFKS MKSFSYDRKL APQIGSKPFI AFIGEGFESV EELKHLKEVL LDLFRGEVVS 420 NLNIAGLDRV YVCMALSSNR VFFTHCALRL KKSGTVVPRM ELVEVGPSMD LLVRRHRLPD 480 ESVKNVSQDA IQGKVGRIYI PDQQVGEKAL PNKAKGVKRE RREAKMKVEA KRQKQDSTIP 540 SDP*

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MSQLEMENQE VCFDEDTSTR EETREQQLQT TINEEEKVGT PQVGMMFNSI DEFHDFYKKY  60
AYNHGFGIIT RSTKTDDDGN IKYYTISCAR AGKTNLTRKN PLLPLPSTKI NCKARINVRT  120
FEDGRLCLSG VFLEHNHEFS PGKSRHFLCN KQLDSWAKRI LDLNDQAGIP LSKNFHSLVV  180
EARGYENLTF GEKECRNYID KARRLILGVG DAESLYNYFV IVQSNLSKYV ITKNYALCRI  240
LVGIMSQIKT PQKGRVRRVI QKRAPKLVEN GKKTLILHGT RTSDVLNAVL SEIYHLKKDD  300
SVKYSRRNDN IRPFESGGET SLEYFSLKTD CSLFVFGSHT KKRPNNLVMG RTYDHHIYDL  360
VELGVENFKS MKSFSYDRKL APQIGSKPFI AFIGEGFESV EELKHLKEVL LDLFRGEVVS  420
NLNIAGLDRV YVCMALSSNR VFFTHCALRL KKSGTVVPRM ELVEVGPSMD LLVRRHRLPD  480
ESVKNVSQDA IQGKVGRIYI PDQQVGEKAL PNKAKGVKRE RREAKMKVEA KRQKQDSTIP  540
SDP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3jct_v	7e-42	251	518	7	294	Ribosome biogenesis protein RPF2
6ft6_v	7e-42	251	518	7	294	Ribosome biogenesis protein RPF2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028067899.1	0.0	ribosome production factor 2 homolog
Swissprot	Q9AWM9	1e-149	RPF2_ORYSJ; Ribosome production factor 2 homolog
TrEMBL	A0A2R6PXL1	0.0	A0A2R6PXL1_ACTCH; Ribosome production factor like
STRING	PGSC0003DMT400072406	1e-172	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	7e-15	FAR1-related sequence 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]