PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn041801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29269.3 Da PI: 5.2706 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 9e-12 | 148 | 191 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Achn041801 148 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 191 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.22E-5 | 132 | 196 | No hit | No description |
PROSITE profile | PS50888 | 15.453 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-16 | 145 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 148 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-12 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 149 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEYNGYGFLE ELLATVPTGV SEFYNFDENP FAIPPISSFE DFNLPLNETL NTSLSNFYYP 60 FGDEQLSVPQ VTETPPFRAR ESCSISILES EVQSLLGDGL IRNLDLQGPN CKLEPFQSNE 120 APIFNIGLCP GERKKREKKV GGQPSKNLMA ERRRRKRLND RLSMLRSVVP KISKMDRTSI 180 LGDTIDYMKE LLERIHNLQE EKEVSSDHLN LMGVFKDGKP NEVLVRNAPK GLEQRAIFSS 240 EEIKQALFRN AGYGGRCI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 137 | RKKREK |
2 | 133 | 155 | KKREKKVGGQPSKNLMAERRRRK |
3 | 150 | 157 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028059786.1 | 5e-97 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 9e-42 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A2R6Q0N9 | 1e-170 | A0A2R6Q0N9_ACTCH; Transcription factor bHLH93 like | ||||
STRING | VIT_18s0001g08040.t01 | 3e-86 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-39 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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