PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn041731
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 309aa    MW: 34004.4 Da    PI: 4.6752
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn041731genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.8e-16177213135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ k++
  Achn041731 177 CQHCGVSEtsTPAMRRGPAGPRTLCNACGLMWANKET 213
                 ******9999**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513208.61665100IPR010399Tify domain
PROSITE profilePS5101712.719104146IPR010402CCT domain
PfamPF062035.8E-15104145IPR010402CCT domain
SMARTSM004012.1E-11171227IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-10172214No hitNo description
Gene3DG3DSA:3.30.50.107.5E-14175213IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.04E-13176211No hitNo description
PROSITE patternPS003440177204IPR000679Zinc finger, GATA-type
PfamPF003201.1E-13177213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAANPRPLQ ARPYEDYVQL PAIQIEDDED GEYEDGGDDD MEEADGHATA ANVSERRRYE  60
SGVVVASRTS ELTLAFEGEV YVFPAVTPEK DVDDNPKRSN ISRRIASLVR FREKRKERCF  120
DKKIRYSVRK EVAQRMHRKN GQFASLKANS GSSTWDSAKS FLQGDGTPHP ETVVRRCQHC  180
GVSETSTPAM RRGPAGPRTL CNACGLMWAN KETTIDVKPL IMEGENSSGN HGDPGTPEDT  240
SKAVTGRSDN PSVNPDEEEE LCRTAEDHAN SLPVGIVNPS HNLDEQETLL ERASASETEI  300
DIPANNFI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028084879.11e-141GATA transcription factor 24-like isoform X1
RefseqXP_028084880.11e-141GATA transcription factor 24-like isoform X2
RefseqXP_028084881.11e-141GATA transcription factor 24-like isoform X3
RefseqXP_028084882.11e-141GATA transcription factor 24-like isoform X1
SwissprotQ8GXL72e-50GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2R6Q0960.0A0A2R6Q096_ACTCH; GATA transcription factor
STRINGVIT_18s0001g07730.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-50ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]