PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn040601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 994aa    MW: 110030 Da    PI: 6.4911
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn040601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.31.8e-1970117258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                 dDgy+WrKYGqK++k+s++pr         C++kk+vers+edp++++itYeg H h
  Achn040601  70 DDGYKWRKYGQKSIKNSPHPR---------CSAKKQVERSSEDPDALIITYEGLHLH 117
                 8*******************8.........99***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0145832.85642966IPR005936Peptidase, FtsH
PROSITE profilePS5081118.9864120IPR003657WRKY domain
SuperFamilySSF1182901.26E-1766118IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-1966117IPR003657WRKY domain
SMARTSM007744.3E-2469119IPR003657WRKY domain
PfamPF031066.8E-1470117IPR003657WRKY domain
PfamPF064803.3E-9321430IPR011546Peptidase M41, FtsH extracellular
TIGRFAMsTIGR012411.8E-202442941IPR005936Peptidase, FtsH
Gene3DG3DSA:3.40.50.3004.0E-60500683IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525407.32E-68501748IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM003821.0E-20537677IPR003593AAA+ ATPase domain
CDDcd000094.46E-26538675No hitNo description
PfamPF000042.8E-41542674IPR003959ATPase, AAA-type, core
PROSITE patternPS006740645663IPR003960ATPase, AAA-type, conserved site
Gene3DG3DSA:1.10.8.601.5E-24684751No hitNo description
PfamPF014341.5E-74737939IPR000642Peptidase M41
SuperFamilySSF1409901.16E-62758948No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MLPPPETAID HLVSAAYSVP TIEDINNALS VTNHEHHFQD TRISVLEKDL SNVENKYTLR  60
IKSCGSGMAD DGYKWRKYGQ KSIKNSPHPR CSAKKQVERS SEDPDALIIT YEGLHLHYAY  120
PHFLLNPAQH VNPQSKKLKS TVSKDEAQAQ GSLSIEEYHR QSSTNLSEGT LYDPFVDFVP  180
EEMGPQGLLE DMKTGSGSYG IRTVASKELV SSNAGIEEGL GLVRGYLTSI GAGTGRQLVS  240
KSNTSLSEFS SIFANPRLRR IFCTETPKKR NYENYYPKNK KEILKEQNQK SESKEESSTN  300
DHGSFQESSM KQFQNLVTPL LFIAFVLSSI VSSPREQAQI SFQEFKNKLL EHGLVDHIVV  360
TNKSVAKVYV KSSASDARQT NDDVVQGPTD DAHARRSVSH YKYYFNIGSV DSFEEKLEEA  420
QEALGIDPHN YVPVTYVSQV NWFQELMRFA PTALLLGALY FMGRRMQGGL GVGGPGGKGA  480
RGIFNIGKAQ VTKMDKNSKN KVYFKDVAGC DEAKQEIMEF VHFLKNPKKY EELGAKIPKG  540
ALLVGPPGTG KTLLAKATAG ESGVPFLSIS GSDFMEMFVG VGPSRVRKLF QEARQYAPSI  600
VFIDEIDAIG RARGHGGFSG GNDERESTLN QLLVEMDGFG TTAGVVVLAG TNRPDILDKA  660
LLRPGRFDRQ ITIDKPDIKG RDQIFQIYLT KLKLDQEPSY YSQRLAALTP GFAGADIANV  720
CNEAALIAAR SESIQVTMEH FEAAIDRVIG GLEKKNKVIS KLERRTVAYH ESGHAVAGWF  780
LEHAEPLLKV TIVPRGTAAL GFAQYVPNEN LLMTKEQLFD VTCMTLGGRA AEQVLLGKIS  840
TGAQNDLEKV TKMTYAQVAI YGFSDKVGLL SFPQRDDSFE MTKPYSSKTA AIIDNEVREW  900
VGKAYDRTLQ LIEEHKEHIA QIAELLLEKE VLHQDDLIKV LGERPFKSSE PTNYDRFKQG  960
FQEDEKEPKQ TTQDGTTVEN DGSSPLEPEV VPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6nyy_A0.04649694506AFG3-like protein 2
6nyy_B0.04649694506AFG3-like protein 2
6nyy_C0.04649694506AFG3-like protein 2
6nyy_D0.04649694506AFG3-like protein 2
6nyy_E0.04649694506AFG3-like protein 2
6nyy_F0.04649694506AFG3-like protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable ATP-dependent zinc metallopeptidase. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124660.10.0ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like isoform X1
SwissprotQ0DHL40.0FTSH8_ORYSJ; ATP-dependent zinc metalloprotease FTSH 8, mitochondrial
TrEMBLA0A2R6R8950.0A0A2R6R895_ACTCH; ATP-dependent zinc metalloprotease FTSH 8 like
STRINGGorai.002G257200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA225123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-34WRKY DNA-binding protein 49
Publications ? help Back to Top
  1. Yu F,Park S,Rodermel SR
    Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes.
    Plant Physiol., 2005. 138(4): p. 1957-66
    [PMID:16040665]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]