PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn036201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 295aa    MW: 33491.4 Da    PI: 9.3793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn036201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-082873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + + ++   +W  +a++++ g+t  +++  ++ 
       Achn036201 28 KWTPEENKRFENALAFFDKDtpdRWYNVAAMIP-GKTVSDVIKQYRE 73
                     8********************************.*******999986 PP
2Myb_DNA-binding47.34.8e-15135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
       Achn036201 135 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.6332479IPR017884SANT domain
SMARTSM007172.8E-92577IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-112781IPR009057Homeodomain-like
PfamPF002497.5E-72873IPR001005SANT/Myb domain
CDDcd001671.10E-62874No hitNo description
Gene3DG3DSA:1.10.10.604.1E-13125184IPR009057Homeodomain-like
PROSITE profilePS5129420.486128184IPR017930Myb domain
SuperFamilySSF466891.45E-17129183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17131183IPR006447Myb domain, plants
SMARTSM007172.1E-13132182IPR001005SANT/Myb domain
CDDcd001675.87E-11135180No hitNo description
PfamPF002491.9E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNRGTEILTP SSYITNSNWL FEESKGTKWT PEENKRFENA LAFFDKDTPD RWYNVAAMIP  60
GKTVSDVIKQ YRELEEDVSD IEAGLIPIPG YNTGSFTLEW VNHQGSHGFK QFYSPCGKRS  120
SLNQPSEQER KKGVPWTEEE HRQFLMGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
IRQLSGGKDK RRSSIHDITT VNITDTKSPS EDPSATVVRP QQHLNMNGMA GALYSWNLPS  240
EGPARVFNVA TSSLLMASSY GLKLQEQNLQ RTALNGPMVE THNRGFQMHF SQYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-172693875RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057725.11e-167transcription factor DIVARICATA-like
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2R6RXA10.0A0A2R6RXA1_ACTCH; Transcription factor DIVARICATA like
STRINGXP_002534707.11e-144(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-121MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]