PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn034531
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 518aa    MW: 56518.1 Da    PI: 10.1922
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn034531genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-24189233145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+ep+rCrRtDGKkWRCsr++++++k+CErHl+rgr+rsrk++e 
  Achn034531 189 DPEPWRCRRTDGKKWRCSRDAVADQKYCERHLNRGRHRSRKPVEG 233
                 79****************************************985 PP
2WRC77.71.1e-24392436145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+ep+rCrRtDGKkWRCsr++++++k+CErHl+rgr+rsrk++e 
  Achn034531 392 DPEPWRCRRTDGKKWRCSRDAVADQKYCERHLNRGRHRSRKPVEG 436
                 79****************************************985 PP
3QLQ55.91.3e-19120155237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT++Q+ +L++Q+l+yKy++an+PvP++Ll a+++
  Achn034531 120 LFTPSQWVELEHQALIYKYIVANVPVPSNLLIALKN 155
                 6******************************99976 PP
4QLQ55.91.3e-19323358237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  FT++Q+ +L++Q+l+yKy++an+PvP++Ll a+++
  Achn034531 323 LFTPSQWVELEHQALIYKYIVANVPVPSNLLIALKN 358
                 6******************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.9E-11119155IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.503120155IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.5E-14121153IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.023189233IPR014977WRC domain
PfamPF088797.9E-21190232IPR014977WRC domain
SMARTSM009519.9E-11322358IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.503323358IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.5E-14324356IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.023392436IPR014977WRC domain
PfamPF088797.9E-21393435IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDLGGLVGPD NGVSSQAISD PETTKPNSNG SGFLKQGRSG SGQDDWRSSK VSRTDDSESL  60
NTMLHLQGTP LFLRSDSLQQ NMFSFSSPRS EVPFLSKNGG SADRTPYSYT RNSGYGSRGL  120
FTPSQWVELE HQALIYKYIV ANVPVPSNLL IALKNSLHPY GLSGLSSRSY APNTLGWGSF  180
HLGFSGNTDP EPWRCRRTDG KKWRCSRDAV ADQKYCERHL NRGRHRSRKP VEGQIGQVVT  240
GSTPKVGSIA CSTSASVIPS SGASNSLGIT QYQFKGLKTG AEHPSADVVV NRSEVPFLSK  300
NGGSADRTPY SYTRNSGYGS RGLFTPSQWV ELEHQALIYK YIVANVPVPS NLLIALKNSL  360
HPYGLSGLSS RSYAPNTLGW GSFHLGFSGN TDPEPWRCRR TDGKKWRCSR DAVADQKYCE  420
RHLNRGRHRS RKPVEGQIGQ VVTGSTPKVG SIACSTSASV IPSSGASNSL GITQYQFKGL  480
KTGAEHPSAD VFVNRNHTTR LYQQKRITLV KQETYLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059566.11e-127growth-regulating factor 1-like isoform X2
SwissprotO810011e-60GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A2R6PAB10.0A0A2R6PAB1_ACTCH; Growth-regulating factor like
STRINGEMJ092291e-103(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.16e-63growth-regulating factor 1
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]