PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn033791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 404aa    MW: 45268.3 Da    PI: 6.5755
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn033791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.85.1e-44872253134
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec...eaesssssasnsssg...kaaks 93 
                  kkdrhski T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+eWLl+++k aikelt+  +s++  sec   +  ++s ++++s  +    ++++
  Achn033791  87 SKKDRHSKINTAQGPRDRRMRLSLEVAREFFSLQDMLGFDKASKTVEWLLNMSKSAIKELTRGANSASstSECevvSGIDESLAVKTSI-KaksTKSSA 184
                 69************************************************************955544336776663333333333222.233344444 PP

         TCP  94 aakskksqksaasalnlakesrakarararertrekmrikn 134
                 ++k+ ++ k++++++  a+esr karararert+ek++i++
  Achn033791 185 KEKKIRELKRKSTFNPTARESRDKARARARERTSEKKKIEE 225
                 4455555556665678888******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4287222IPR005333Transcription factor, TCP
PROSITE profilePS5136936.17688146IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.48203220IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MYPFNTNGNL ISYTLYNPNS KQDHPPPPSS LSYFPSPPYI PYEDDDLVFL HDLFLSKTTS  60
ETTNLPDNSN KQCQSPIERI QRKRSHSKKD RHSKINTAQG PRDRRMRLSL EVAREFFSLQ  120
DMLGFDKASK TVEWLLNMSK SAIKELTRGA NSASSTSECE VVSGIDESLA VKTSIKAKST  180
KSSAKEKKIR ELKRKSTFNP TARESRDKAR ARARERTSEK KKIEEVKLPN LEANMSHDMN  240
RFRSWSDHPF DNRDKSCTHS HDNINPHLDV LAHDVEELSS SMIYNHNSGI SQELDGDRKD  300
DGMGRKRRMY QFGALGVLGD DSEGSLSKAT VFWVFSIDDG LGGCNVGGWV FFVDGSEGSD  360
HQECLLLFDG GDQLGFSSKG CWFLVLTFEV DVCSGDDGHG DDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028110704.14e-69transcription factor CYCLOIDEA-like isoform X1
TrEMBLA0A2R6QI631e-176A0A2R6QI63_ACTCH; Transcription factor like
STRINGEOY209266e-55(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-21TCP domain protein 12