PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn033621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 25522.5 Da PI: 4.2899 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46 | 1.3e-14 | 2 | 50 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+++AeIrdp + +r +lg++ aeeA k ++ r+++e+ Achn033621 2 YKGVRMRK-WGSYAAEIRDPI----QkRRLWLGTYKNAEEASKVYESKRLEFEK 50 9*****99.**********72....35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.5E-13 | 1 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.884 | 1 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-7 | 2 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 2 | 13 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-13 | 2 | 49 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 2 | 50 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.95E-18 | 2 | 48 | No hit | No description |
PRINTS | PR00367 | 1.2E-6 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MYKGVRMRKW GSYAAEIRDP IQKRRLWLGT YKNAEEASKV YESKRLEFEK ALLSVKNKNS 60 NFNVEHPCAL EDNSLYSPSS VLEVEDNSIT SGKEDDGLVS IVEEEQLIAR FLSDQFVLPP 120 VFEDMNLLRI NDLAQQQTLE FLGDSKHRRD FNLRFENNLS YDKNMGQFSD GLDDVTIDFS 180 TCGENYDLPN FDFELDTEEL AWVNEALNIG CPSTNLFQVF K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028080544.1 | 4e-56 | ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A2R6PD04 | 1e-161 | A0A2R6PD04_ACTCH; Ethylene-responsive transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12718 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 2e-18 | ERF family protein |