PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn032341
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 1261aa    MW: 143965 Da    PI: 8.5456
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn032341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.21.6e-1942149190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                 k+Y++Y+++ GF +r+++s+k  +r++ +t+  fvC keg   ++ +k                 +k++r+ ++ ++gCka+l++k +k + kwevt +
  Achn032341  42 KYYEDYGRQNGFWIRTRSSYKGqNRSNDVTSVLFVCAKEGMYVPKAEKdgvegnddrseddkvlPNKRKRSCSTAKCGCKAHLRIKCDKwSMKWEVTVF 140
                 69****************9998567888*************999999999************99899999999************************** PP

        FAR1  82 eleHnHela 90 
                 ++ HnH+l+
  Achn032341 141 DNAHNHQLV 149
                 *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1642149IPR004330FAR1 DNA binding domain
PfamPF105514.0E-36266360IPR018289MULE transposase domain
PROSITE profilePS5096610.039547583IPR007527Zinc finger, SWIM-type
PfamPF044349.5E-5548580IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-4558585IPR006564Zinc finger, PMZ-type
SuperFamilySSF577565.76E-5723747IPR001878Zinc finger, CCHC-type
HamapMF_0193445.6998271131IPR0101981,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB
SuperFamilySSF520961.84E-24838943IPR029045ClpP/crotonase-like domain
Gene3DG3DSA:3.90.226.104.6E-658411069IPR029045ClpP/crotonase-like domain
CDDcd065583.33E-588421068No hitNo description
PfamPF003784.3E-23850943IPR001753Crotonase superfamily
PfamPF003781.2E-369721095IPR001753Crotonase superfamily
SuperFamilySSF520961.15E-349731108IPR029045ClpP/crotonase-like domain
Gene3DG3DSA:1.10.12.101.4E-1610701110IPR014748Crontonase, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009234Biological Processmenaquinone biosynthetic process
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0008935Molecular Function1,4-dihydroxy-2-naphthoyl-CoA synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1261 aa     Download sequence    Send to blast
MEDSFEFFDF EVEDLHTSNN DVKKLEAPSS GMSFETIEEA RKYYEDYGRQ NGFWIRTRSS  60
YKGQNRSNDV TSVLFVCAKE GMYVPKAEKD GVEGNDDRSE DDKVLPNKRK RSCSTAKCGC  120
KAHLRIKCDK WSMKWEVTVF DNAHNHQLVT PSKRMKMKSN RHMPKAVKDL TEAFHRKNLQ  180
ISKVASIFGG EYIGFDNRDC YNHLRNVRHR ELDGGDAQSV LTYFKNKQAQ NPHFFYAIQC  240
DESARAVNFF WVDSRSRMAY HYFGDVVTFD TTYRTNKYDM PFAPFTGVNH HMHSIQFGCA  300
LLQDETELTF LWLFETWLEA MGGRAPTSII TDQDLAMKRA IAKVFPNTRH RLCIWHIKKK  360
FVEKLSQVYY KRSKFKKEVK KCIWKTYKKD DFEERWMALI KEYGLDTNEW LQQLYDIRES  420
WVPVYNRGTF FAGMNTTGRS EGVNSFFDDF VTSKTNLKEF VVKYEQALKK IVKRESDEDF  480
ESEHKFRIVN ENEFLLKHAA KVYTRNVFNK FKDEISEVFR YKVEDVGDTN RFQSFVVRSK  540
VYDIEKFIVT LDLQTYEGKC ECQKFEFVGI LCTHILKVFV RLDIDAIPDH FILSRWRQKA  600
NKFRIIDSED LVHDDGKEKS EALRLSHMCQ ESTKLACLAA PSNEAYTIYI ETMNGLFEKL  660
IKVTSNVPPM EVCLEKDNVH TTEPSHILIS DPNISQTKGR KKATMGNSAS IQFGRLKSGI  720
EMALNKNKRK CNMCNKLGHD RRTCPQNPMS KTYQATKQLP SSHYLSTVPA MADINTARRL  780
ASVANHLVPV RPAQTTRGSI GPSNCSASIN DSYHRIHGEV STHEPVWKIV PCDENGKEFT  840
DIIYETAVGE AIAKITINRP ERRNAFRPHT IKELIRAFND ARDDSSVGVI IFTGKGTKAF  900
CSGGDQALRS KDGYADYENF GRLNVLDLQV QIRRLPKPVI AMVTFPISHF ETFLLQFVLF  960
GLYLTVALCR NKVAGYAVGG GHVLHMVCDL TIAADNAIFG QTGPKVGSFD AGYGSSIMSR  1020
LVGPKKAREM WFLARFYSAS EAENMGLVNI VVPLEKLEQE TVKWCREILR NSPTAIRVLK  1080
SSLNAVDDGH AGLQELGGDT TLIFYGTEEG VPTYTHQMVR MYGRFQYVRE VALEGVDRGA  1140
DNDSIDGMEV VRGVGKFGNG LVVGGHEFPG GRNQEKGLEP YQIAMSRNEF RFFLSCDINL  1200
PVTFRVERLE GNLPAAKPPN SAMSRNEFRF FLSCDINLPV TFRVERLEGN LPAAKPPNSG  1260
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2iex_A1e-102838110910249Dihydroxynapthoic acid synthetase
2iex_B1e-102838110910249Dihydroxynapthoic acid synthetase
2iex_C1e-102838110910249Dihydroxynapthoic acid synthetase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370376KRSKFKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021815267.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A251PRW60.0A0A251PRW6_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-131FAR1-related sequence 5