PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn032201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 294aa    MW: 33155 Da    PI: 6.7283
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn032201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092362702155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yp+++++ +LA+++gL+ rq+ +WF N+R ++
  Achn032201 236 AWPYPTEADKIKLAESTGLDPRQINNWFINQRKRH 270
                 569*****************************885 PP
2ELK30.58e-11190211122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK+ LlrKY+++++sLk  Fs
  Achn032201 190 ELKDSLLRKYGSHISSLKLDFS 211
                 9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18201.6E-20764IPR029058Alpha/Beta hydrolase fold
PfamPF004502.0E-20765IPR001563Peptidase S10, serine carboxypeptidase
SuperFamilySSF534741.15E-257109IPR029058Alpha/Beta hydrolase fold
PRINTSPR007249.6E-53446IPR001563Peptidase S10, serine carboxypeptidase
PRINTSPR007249.6E-54757IPR001563Peptidase S10, serine carboxypeptidase
PfamPF004501.6E-568110IPR001563Peptidase S10, serine carboxypeptidase
Gene3DG3DSA:3.40.50.18206.0E-572115IPR029058Alpha/Beta hydrolase fold
PROSITE profilePS512139.586190210IPR005539ELK domain
PfamPF037891.9E-8190211IPR005539ELK domain
SMARTSM011888.8E-6190211IPR005539ELK domain
PROSITE profilePS5007113.119210273IPR001356Homeobox domain
SuperFamilySSF466893.17E-19211282IPR009057Homeodomain-like
SMARTSM003895.6E-14212277IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-27215274IPR009057Homeodomain-like
CDDcd000869.34E-13222274No hitNo description
PfamPF059201.7E-16230269IPR008422Homeobox KN domain
PROSITE patternPS000270248271IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0004185Molecular Functionserine-type carboxypeptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MHISKEGCSS IGYGEAEELG PFFPQKGKPE LKFNNHTWNK AANLLFVESP VGVGFSYTNT  60
SNDIQELGDT IAGHYVPQLA ELIFDNNKNI SKDDYINFKG IMGNQGLSYY DEVESQSDSK  120
TVAIGRRRAL PSRTSSDVNL CHNLNAKRSR GDNDLQLFLL HSDEGAVSSD DEFSGLENEG  180
QEAQTSEDRE LKDSLLRKYG SHISSLKLDF SKKKKKGKLP KQARKTLLEW WELHYAWPYP  240
TEADKIKLAE STGLDPRQIN NWFINQRKRH WKPSENMQLA VMGKLSGQFF SDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sc2_A1e-20711364198SERINE CARBOXYPEPTIDASE II (CPDW-II)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84JS62e-52KNAT6_ARATH; Homeobox protein knotted-1-like 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-44KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]