PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn031951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 461aa    MW: 50909.8 Da    PI: 7.5485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn031951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.15.4e-31132236199
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +  l+
  Achn031951 132 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGKDLLF 230
                 89***************************966778999*************************************************654776666677 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 + ++r+
  Achn031951 231 IDWRRR 236
                 777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-42127239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-29129237IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-27130219No hitNo description
PROSITE profilePS5086314.48132237IPR003340B3 DNA binding domain
PfamPF023621.7E-28132236IPR003340B3 DNA binding domain
SMARTSM010192.3E-22132237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MNFMAKRSSQ GFYGEDHDQN QSGNARGTLP FPSSLSNSSE SYKSLVPLTF QDHCHHHRPD  60
QISRLELMDA SPSALGNNSE EDPSSGPADY DNDFRQGDTY SEGLRLAVGG SGSVGVGVGV  120
GAGAVVEREH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP  180
WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG VGELGKDLLF IDWRRRPEAP  240
ELPQSFGSSN LPQHYYSFHN HWSTAHHYPW STSPLYLQPQ PQPYSHFQHP NATAYPYQPH  300
YPGSSGTGPY CYNSVVNPCS SSVIYLSSRS AGGQQQQQAG GMVKVRSVGG GRVEGMPMVF  360
ESVPVVQGKA AAKRLRLFGV NMDCPISSES DECEILSTTT TRTHIVPHPP LHLIMAAHPP  420
YLPSTPIPPL QLRLYNGSAL PAMHSDKSKP SNKSSFDLDM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-651252391116B3 domain-containing transcription factor NGA1
5os9_B2e-651252391116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076169.11e-146B3 domain-containing protein Os03g0120900-like
SwissprotQ6EU305e-73Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A2R6QMW80.0A0A2R6QMW8_ACTCH; B3 domain-containing transcription factor
STRINGEOY238141e-110(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-70B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]