PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn029561
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 317aa    MW: 34922.6 Da    PI: 8.8714
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn029561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32158214158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rakle ekk+ +k rkpylheSRh+hA+rR+Rg+gGrF
  Achn029561 158 EEPVYVNAKQYNGILRRRQRRAKLEMEKKV-IKVRKPYLHESRHQHAMRRARGCGGRF 214
                 69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-37156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.062157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-28159214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MPTKSKTEDQ QAENGAHIIP PSAVYAQPWW RGIGNNAMSS PVGHINGTAA MGTIPSQANG  60
DGSNKETHTA TAQQSELSGH NVQEQQHIKH IPSSTPLAIG EHLEPNSQME LVGHSIVLTP  120
YPYAEPHYGE IMAYGAQVHP HLLGIHQTRM PLPLEMEEEP VYVNAKQYNG ILRRRQRRAK  180
LEMEKKVIKV RKPYLHESRH QHAMRRARGC GGRFLNTKID NNSTNPTSEK EPKSGTTVST  240
QSGNSSSSEY WPSNSNGNSD QYRHISHASS HGNINGHGLS SMHHFRSIDG DGVDWFDQEK  300
GNVFVNQAPR GATTTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-20158218262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172179RRRQRRAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058629.11e-157nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBLA0A2R6RA710.0A0A2R6RA71_ACTCH; Nuclear transcription factor Y subunit A-1 like
STRINGVIT_13s0064g00860.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-38nuclear factor Y, subunit A1