PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn028471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 543aa    MW: 58791.4 Da    PI: 7.3969
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn028471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.13.2e-23177220144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e
  Achn028471 177 DPEPGRCRRTDGKKWRCSRDAVTDQKYCERHINRGRHRSRKPVE 220
                 79***************************************987 PP
2QLQ53.19.6e-19130164236
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                 +FT++Q+ +L++Q+l+yKy +an+PvP++Ll a++
  Achn028471 130 PFTPSQWVELEHQALIYKYVVANVPVPANLLIALK 164
                 9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.4E-10129165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.412130165IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-13130163IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.389177221IPR014977WRC domain
PfamPF088791.7E-20178220IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGPENGVSYE ILQSPEATKP KSNIGSGFWK QVRSGSGEED LRGSKVPRTE DFDAPKTMLY  60
QRSNSLISDD GLQNQNMLCF SSPRSDAHSH SKTGGLAEMS SQNLALSYFQ HTPYAYSANA  120
GYGCGGMHRP FTPSQWVELE HQALIYKYVV ANVPVPANLL IALKRSLNPY GFSGNTDPEP  180
GRCRRTDGKK WRCSRDAVTD QKYCERHINR GRHRSRKPVE CQTGQAISGP ATKVAPVACS  240
TSASVMSGCG ASNRLGITHQ QFKGLQSAAE NPSADVLLNR MPNPQGQSVV SPTTNLKAKD  300
SPFSIPKQHM PIDKPPHLEF GLVSSDSLFS PSQNSPFMSS RNNISILDFN DHESQDQHLL  360
HHFIDDWSKD QSNCAAIAWP DELKSDWTQL SMSIPMASSD FSSTSSSPRQ EKLALSPLRL  420
AHELDPLQNL SESTPKNTSW IPISWGSSIG GPLGEVLNST PSTVGPCKVS SAFNLTNGVW  480
IDSPHSEFTL TGVLQKTTFV SLSNSSSGSS PRADKNKTNE SGSLGDDILG STLASSFSIP  540
SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059566.10.0growth-regulating factor 1-like isoform X2
TrEMBLA0A2R6S1880.0A0A2R6S188_ACTCH; Growth-regulating factor like
STRINGVIT_00s0494g00010.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-81growth-regulating factor 1