PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn025901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 430aa    MW: 48705.1 Da    PI: 6.4438
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn025901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.6e-103563931954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  Achn025901 356 FEHflHPYPNDSEKLMLASQTGLTKNQVSNWFINARVR 393
                 664459******************************88 PP
2BELL97.41.2e-31218289172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e++elq k++kL+slleeV++rY+qy++ l+ v+ssFe++ag+g+ k+Yt+lAl+a+Srh   L+d ia+qi
  Achn025901 218 EKHELQVKIVKLISLLEEVERRYEQYYQHLEEVVSSFEMIAGVGAGKSYTALALQAMSRHLCRLRDGIASQI 289
                 689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-29150287IPR006563POX domain
PfamPF075261.4E-35155286IPR006563POX domain
PROSITE profilePS5007112.017334397IPR001356Homeobox domain
SMARTSM003893.3E-9337401IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27342403IPR009057Homeodomain-like
SuperFamilySSF466891.33E-17343404IPR009057Homeodomain-like
CDDcd000861.32E-10343398No hitNo description
PfamPF059204.7E-17354393IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MVSQDSPPNS ASSILHQFII SDSISGQTQF ENQHFEAYRN ELRLISDESP INHSRHLMDL  60
LGASNETNHQ AQRLSLSLSS DMLVPPIQFR QRPLNSNLIS PSYFISEARE ACNLRVERVL  120
EEYSFVGSSP FASASTPMNQ PCSASYGTTE YFTVVVGNSR YLKPAQVLLE EVVNIGGKAM  180
DLRNEKYIRR LSCNIRRESL GLCSELKAEL CNNGLSGEKH ELQVKIVKLI SLLEEVERRY  240
EQYYQHLEEV VSSFEMIAGV GAGKSYTALA LQAMSRHLCR LRDGIASQII DARRKISQDM  300
PKINTGLSQL SLFDKENRHN RLSLQQLGIM QSQRQAWRQI RGLPETSVAI LRSWLFEHFL  360
HPYPNDSEKL MLASQTGLTK NQVSNWFINA RVRLWKPMIE EMYKEEFADD SADSDPLLGS  420
SSLPGERDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16343401563Homeobox protein Meis2
3k2a_B4e-16343401563Homeobox protein Meis2
4xrm_A4e-16343401563Homeobox protein Meis2
4xrm_B4e-16343401563Homeobox protein Meis2
4xrs_A4e-16343400158Homeobox protein Meis1
4xrs_B4e-16343400158Homeobox protein Meis1
5bng_A4e-16343401159Homeobox protein Meis2
5bng_B4e-16343401159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112242.10.0BEL1-like homeodomain protein 11 isoform X1
SwissprotQ1PFD11e-101BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A2R6R3I40.0A0A2R6R3I4_ACTCH; BEL1-like homeodomain protein 11
STRINGVIT_18s0001g13130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-95BEL1-like homeodomain 11