PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn025751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 33108.5 Da PI: 8.2035 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.8e-20 | 131 | 180 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+ta+eAa a++aa++kl+g Achn025751 131 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAQEAAVAYDAAAQKLYG 180 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.48E-21 | 130 | 190 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-22 | 131 | 188 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 131 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-35 | 131 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 131 | 188 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-14 | 131 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MCINPPLSSL SLSHIFKTCF FDGLEQPTYD GGGLLGIPIR TKGHQQPRIS AKKQTLAIET 60 PPYRAYYGIK TQTLQGLWFV LIWSPKKQVE MLKSVMGLGE RSQQQAKKPA QATSRKGCMR 120 GKGGPENASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTAQEAAVA YDAAAQKLYG 180 PNAKLNLPEL PASIIHCSLG SSSSSSPTSG RGRGLSDVRD CCNNKWDVVE SHHSERVGEN 240 DVGMDGFWGN LNANLPEFDD SSIWREATAA MDFQAMADLG IFAGDFEDGK GLEGMQYPWC 300 H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 132 | 188 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028079113.1 | 7e-81 | dehydration-responsive element-binding protein 2D-like | ||||
Swissprot | Q9LQZ2 | 2e-53 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A2R6R026 | 1e-155 | A0A2R6R026_ACTCH; Dehydration-responsive element-binding protein like | ||||
STRING | XP_002510462.1 | 3e-65 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-44 | ERF family protein |
Publications ? help Back to Top | |||
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