PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn025751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 302aa    MW: 33108.5 Da    PI: 8.2035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn025751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20131180255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ykGVr++  +g+WvAeIr+p   + r +r +lg+f+ta+eAa a++aa++kl+g
  Achn025751 131 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAQEAAVAYDAAAQKLYG 180
                 69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.48E-21130190No hitNo description
SuperFamilySSF541716.54E-22131188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-30131189IPR001471AP2/ERF domain
SMARTSM003804.1E-35131194IPR001471AP2/ERF domain
PROSITE profilePS5103222.55131188IPR001471AP2/ERF domain
PfamPF008477.6E-14131180IPR001471AP2/ERF domain
PRINTSPR003673.8E-10132143IPR001471AP2/ERF domain
PRINTSPR003673.8E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MCINPPLSSL SLSHIFKTCF FDGLEQPTYD GGGLLGIPIR TKGHQQPRIS AKKQTLAIET  60
PPYRAYYGIK TQTLQGLWFV LIWSPKKQVE MLKSVMGLGE RSQQQAKKPA QATSRKGCMR  120
GKGGPENASC TYKGVRQRTW GKWVAEIREP NRGARLWLGT FDTAQEAAVA YDAAAQKLYG  180
PNAKLNLPEL PASIIHCSLG SSSSSSPTSG RGRGLSDVRD CCNNKWDVVE SHHSERVGEN  240
DVGMDGFWGN LNANLPEFDD SSIWREATAA MDFQAMADLG IFAGDFEDGK GLEGMQYPWC  300
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17132188360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079113.17e-81dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ22e-53DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2R6R0261e-155A0A2R6R026_ACTCH; Dehydration-responsive element-binding protein like
STRINGXP_002510462.13e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]