PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn024671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 292aa    MW: 32756.6 Da    PI: 5.0288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn024671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-1969117355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r+++ +g+Wv+eIrdp+++    r+++g+f taeeAa+a+++ ++k++g
  Achn024671  69 YRGIRQRP-WGKWVSEIRDPRKG---GRVWIGTFNTAEEAARAYDREARKIRG 117
                 9*******.**********9653...7************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-2168126IPR016177DNA-binding domain
PROSITE profilePS5103222.68268125IPR001471AP2/ERF domain
SMARTSM003803.0E-3768131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3168126IPR001471AP2/ERF domain
CDDcd000184.80E-3269126No hitNo description
PRINTSPR003672.7E-116980IPR001471AP2/ERF domain
PfamPF008479.9E-1269117IPR001471AP2/ERF domain
PRINTSPR003672.7E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MCGGSILAEL IPRNGNHRLS ASQLWPNSPF VTKLKPPQDQ NNGSFSLLSY VCCDERVEKK  60
AKRQHKNLYR GIRQRPWGKW VSEIRDPRKG GRVWIGTFNT AEEAARAYDR EARKIRGNKA  120
KVNFPNEDDH SIPFPPQANP QPAAMTHPNG GFRDNLIQFG AYNSDGFHSV PCSDPVSVLH  180
SEEVFGSGLE CAYPSMDCKL KVKEDRENKE EREYSKEAAV IEVEETAGEE IELEKLSEEL  240
MAYESIMKFY QIPYLDGQSP DSLPNTAAEN DVIGCGAVEL WSFDDFPPPF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2169125360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698550.0GQ869855.1 Actinidia deliciosa ethylene response factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069278.19e-90ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A2R6PNU41e-180A0A2R6PNU4_ACTCH; Ethylene-responsive transcription factor RAP2-3 like
STRINGGorai.004G051600.12e-79(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-28ethylene-responsive element binding protein