PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn023891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 1604aa MW: 181064 Da PI: 9.1827 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 289.1 | 1.2e-88 | 1229 | 1601 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilk 92 l +lLl++Ae v ++++e a+++L + + lasp+g+p+qR+++yf+ AL++r+ r + + + +p+e+++++ +s++l +lk ++ P+ + Achn023891 1229 LAHLLLAAAEKVGNQQFESANRMLDHCEWLASPAGNPVQRVVHYFAGALRERIDRVTGRFLSRRRPKEEEKYDmrglgVSSNLLYLK-IHQQLPFTQ 1324 579****************************************************88889989999999988866664444444444.56778**** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 + ++ qaIle+ve e+++H iD++i G+QW+ L+qaLa+R + l+iT+vg + e++ etg++La++A++l++pf ++v++ ++++d Achn023891 1325 VILFVGIQAILESVELETKIHLIDLQIRSGVQWIILMQALADRVkYPIEYLKITAVGT---AQGEKMVETGKKLASYAKSLNLPFLYKVVLLSDMKD 1418 *******************************************9556669********...5799******************************** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 l+ e++++++ Ea+aV ++ l ++ + + +le+ +++++++l+P+++vv e ea+hns+ F++rf+eal +ysa fd+le + +++ ri + Achn023891 1419 LKKEHFHIETCEATAVFFQTILRSMISMPYCLEN----LMRVIRRLNPTIMVVGEVEANHNSPLFFNRFIEALFFYSAYFDCLEDCMNGDDKYRIIL 1511 *************************988888888....*********************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E ++++ i n+va+eg+er +r+ +++ W+ ++++G+ + lse+ qa+l++++++ + ++e++ + l+ gWk+ p+ s+S W+ Achn023891 1512 EGMVFRDGIHNIVAAEGEERYNRNVKMSVWKTFFTRFGMVGIGLSESSLYQANLIVKQFScGSSCTLESDGNFLIVGWKGSPIHSLSTWK 1601 ************************************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01406 | 2.9E-28 | 530 | 615 | IPR006880 | INO80 complex subunit B-like conserved region |
Pfam | PF04795 | 1.0E-18 | 530 | 615 | IPR006880 | INO80 complex subunit B-like conserved region |
Gene3D | G3DSA:3.90.226.10 | 3.5E-9 | 688 | 737 | IPR029045 | ClpP/crotonase-like domain |
Pfam | PF00574 | 3.5E-4 | 696 | 737 | IPR023562 | Clp protease proteolytic subunit /Translocation-enhancing protein TepA |
PRINTS | PR00127 | 3.5E-8 | 697 | 712 | IPR001907 | ATP-dependent Clp protease proteolytic subunit |
SMART | SM01406 | 6.4E-5 | 803 | 865 | IPR006880 | INO80 complex subunit B-like conserved region |
Pfam | PF04795 | 1.2E-7 | 804 | 865 | IPR006880 | INO80 complex subunit B-like conserved region |
Pfam | PF04438 | 1.8E-6 | 881 | 912 | IPR007529 | Zinc finger, HIT-type |
SuperFamily | SSF52096 | 3.88E-10 | 913 | 963 | IPR029045 | ClpP/crotonase-like domain |
Gene3D | G3DSA:3.90.226.10 | 9.4E-15 | 913 | 965 | IPR029045 | ClpP/crotonase-like domain |
Pfam | PF00574 | 4.3E-12 | 913 | 965 | IPR023562 | Clp protease proteolytic subunit /Translocation-enhancing protein TepA |
PRINTS | PR00127 | 3.5E-8 | 941 | 960 | IPR001907 | ATP-dependent Clp protease proteolytic subunit |
PROSITE profile | PS50985 | 43.123 | 1203 | 1580 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.2E-86 | 1229 | 1601 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0031011 | Cellular Component | Ino80 complex | ||||
GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1604 aa Download sequence Send to blast |
MEKITTTLLY QYTPSYPHKS NPNPTTSLLS LSNTHPFSQP ITSSHPFFSL LRFLLGAVYK 60 TRFPFTATST ETVEELGFMI LSAMEEFRCP LFDGIRGAIR KKRSQTIRRP RNELLPFPES 120 RDWSPLSSTA PSDDVCKISS DDNTGADTNT RRKEFNLNQC ALMGSASRAG QIHRVKIKED 180 QSSILSYDGG DFEDNADQEG TALNHGRVIE GFLTPANWRS TSKMKRSLEL QPRNVDIHGG 240 RTGKSQSCGN LRVNGDGVEI DKVKKVKLKV GGIIRTIQAK SNLNGVSGSG SSTISAQTSD 300 AIQSRHKLEN SDDDHSPPDT KGGWKDFSRG NSSRGKEESS MGKRPEKNAS GNQGQNSEPV 360 RKSKRVPKRR VLDVAFDEDD EIRYLEKLKV CKIASGNKNF EEESSKKQKR ISRVLKDSKP 420 DEILEDFVSP RSTHDSKQKS RSERGSVDTD YEEEELVSDG EPEGKKRKKL MRESVNSPIE 480 SKRELALTTR QRALLSSKDA SATGASIVEF PNGLPPAPPR KQKEKLSEVE QQLKKAEAAQ 540 RRRMQVEKAA RESEAEAIRK ILGQDSSRKK REDKMKKRRE ELEQEKAANA LVLPSNTIRS 600 VMGPTGTVIT FSKDMGFPSI FDPKPSRKIR KLAFDRKNVR NSSVKASYSR EFWQPNRSSQ 660 LGIWSIRDDL QIPSTPYFPA YYAEEGQEPN DQEGPQNVES RLFQQRIVRC AGQVGPEMAN 720 NLVAQLLYLD AVDPNKRGVC LHIVMEAIGV QLPTSVYGPV VSIQGMPREM GGRKRSGPGV 780 LGKGFDVIKG SSEAEMSIFD GFVQAEAIRK ILGQDSSRKK REDKMKKRRE ELEQEKAANA 840 LVLPSNTIRS VMGPTGTVIT FSKDMGFPSI FDPKPSSYPP PRETCAAPSC TNPYKYRDSK 900 SKLPLCSLQC YKTDEMLFHK ANLSGHMARL TGQSLEKIYQ DTDRDLFMSA KEAKEYGLID 960 GVIMNPVKAL FNLAMLTDVD FYAPRSVIKM GSAITFTSKL KVEKWIELLV APSMNKVKIN 1020 IFGIFYIENH YKHEQDNQII LLKTKVSDFF FKMANTLFSF QNEMESFCSK YGLYQENLPD 1080 RSVNYPKYFE APPPQAPISN CDLVGDFKFN TPFLSTLPIP ETAILENIQR PAIVETQKEE 1140 QFLYSLQSLE LLNNYASGSK KLEGERNSYR GDETNVSEWK LSTEGIMSVA GERYIQFSTQ 1200 RVDEIFMFMH PYGFSFSGIS FEETRDVELA HLLLAAAEKV GNQQFESANR MLDHCEWLAS 1260 PAGNPVQRVV HYFAGALRER IDRVTGRFLS RRRPKEEEKY DMRGLGVSSN LLYLKIHQQL 1320 PFTQVILFVG IQAILESVEL ETKIHLIDLQ IRSGVQWIIL MQALADRVKY PIEYLKITAV 1380 GTAQGEKMVE TGKKLASYAK SLNLPFLYKV VLLSDMKDLK KEHFHIETCE ATAVFFQTIL 1440 RSMISMPYCL ENLMRVIRRL NPTIMVVGEV EANHNSPLFF NRFIEALFFY SAYFDCLEDC 1500 MNGDDKYRII LEGMVFRDGI HNIVAAEGEE RYNRNVKMSV WKTFFTRFGM VGIGLSESSL 1560 YQANLIVKQF SCGSSCTLES DGNFLIVGWK GSPIHSLSTW KFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-36 | 1237 | 1600 | 27 | 378 | Protein SCARECROW |
5b3h_A | 6e-36 | 1237 | 1600 | 26 | 377 | Protein SCARECROW |
5b3h_D | 6e-36 | 1237 | 1600 | 26 | 377 | Protein SCARECROW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 364 | 369 | RVPKRR |
2 | 464 | 468 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 4e-46 | RGA-like 2 |