PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn023891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 1604aa    MW: 181064 Da    PI: 9.1827
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn023891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.11.2e-88122916011374
        GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPilk 92  
                  l +lLl++Ae v ++++e a+++L + + lasp+g+p+qR+++yf+ AL++r+ r + +  +  +p+e+++++     +s++l +lk  ++  P+ +
  Achn023891 1229 LAHLLLAAAEKVGNQQFESANRMLDHCEWLASPAGNPVQRVVHYFAGALRERIDRVTGRFLSRRRPKEEEKYDmrglgVSSNLLYLK-IHQQLPFTQ 1324
                  579****************************************************88889989999999988866664444444444.56778**** PP

        GRAS   93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 
                  +  ++  qaIle+ve e+++H iD++i  G+QW+ L+qaLa+R   +   l+iT+vg     + e++ etg++La++A++l++pf ++v++ ++++d
  Achn023891 1325 VILFVGIQAILESVELETKIHLIDLQIRSGVQWIILMQALADRVkYPIEYLKITAVGT---AQGEKMVETGKKLASYAKSLNLPFLYKVVLLSDMKD 1418
                  *******************************************9556669********...5799******************************** PP

        GRAS  189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 
                  l+ e++++++ Ea+aV ++  l ++ + + +le+    +++++++l+P+++vv e ea+hns+ F++rf+eal +ysa fd+le  +  +++ ri +
  Achn023891 1419 LKKEHFHIETCEATAVFFQTILRSMISMPYCLEN----LMRVIRRLNPTIMVVGEVEANHNSPLFFNRFIEALFFYSAYFDCLEDCMNGDDKYRIIL 1511
                  *************************988888888....*********************************************************** PP

        GRAS  286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 
                  E ++++  i n+va+eg+er +r+ +++ W+  ++++G+  + lse+   qa+l++++++ +   ++e++ + l+ gWk+ p+ s+S W+
  Achn023891 1512 EGMVFRDGIHNIVAAEGEERYNRNVKMSVWKTFFTRFGMVGIGLSESSLYQANLIVKQFScGSSCTLESDGNFLIVGWKGSPIHSLSTWK 1601
                  ************************************************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM014062.9E-28530615IPR006880INO80 complex subunit B-like conserved region
PfamPF047951.0E-18530615IPR006880INO80 complex subunit B-like conserved region
Gene3DG3DSA:3.90.226.103.5E-9688737IPR029045ClpP/crotonase-like domain
PfamPF005743.5E-4696737IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepA
PRINTSPR001273.5E-8697712IPR001907ATP-dependent Clp protease proteolytic subunit
SMARTSM014066.4E-5803865IPR006880INO80 complex subunit B-like conserved region
PfamPF047951.2E-7804865IPR006880INO80 complex subunit B-like conserved region
PfamPF044381.8E-6881912IPR007529Zinc finger, HIT-type
SuperFamilySSF520963.88E-10913963IPR029045ClpP/crotonase-like domain
Gene3DG3DSA:3.90.226.109.4E-15913965IPR029045ClpP/crotonase-like domain
PfamPF005744.3E-12913965IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepA
PRINTSPR001273.5E-8941960IPR001907ATP-dependent Clp protease proteolytic subunit
PROSITE profilePS5098543.12312031580IPR005202Transcription factor GRAS
PfamPF035144.2E-8612291601IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0031011Cellular ComponentIno80 complex
GO:0004252Molecular Functionserine-type endopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1604 aa     Download sequence    Send to blast
MEKITTTLLY QYTPSYPHKS NPNPTTSLLS LSNTHPFSQP ITSSHPFFSL LRFLLGAVYK  60
TRFPFTATST ETVEELGFMI LSAMEEFRCP LFDGIRGAIR KKRSQTIRRP RNELLPFPES  120
RDWSPLSSTA PSDDVCKISS DDNTGADTNT RRKEFNLNQC ALMGSASRAG QIHRVKIKED  180
QSSILSYDGG DFEDNADQEG TALNHGRVIE GFLTPANWRS TSKMKRSLEL QPRNVDIHGG  240
RTGKSQSCGN LRVNGDGVEI DKVKKVKLKV GGIIRTIQAK SNLNGVSGSG SSTISAQTSD  300
AIQSRHKLEN SDDDHSPPDT KGGWKDFSRG NSSRGKEESS MGKRPEKNAS GNQGQNSEPV  360
RKSKRVPKRR VLDVAFDEDD EIRYLEKLKV CKIASGNKNF EEESSKKQKR ISRVLKDSKP  420
DEILEDFVSP RSTHDSKQKS RSERGSVDTD YEEEELVSDG EPEGKKRKKL MRESVNSPIE  480
SKRELALTTR QRALLSSKDA SATGASIVEF PNGLPPAPPR KQKEKLSEVE QQLKKAEAAQ  540
RRRMQVEKAA RESEAEAIRK ILGQDSSRKK REDKMKKRRE ELEQEKAANA LVLPSNTIRS  600
VMGPTGTVIT FSKDMGFPSI FDPKPSRKIR KLAFDRKNVR NSSVKASYSR EFWQPNRSSQ  660
LGIWSIRDDL QIPSTPYFPA YYAEEGQEPN DQEGPQNVES RLFQQRIVRC AGQVGPEMAN  720
NLVAQLLYLD AVDPNKRGVC LHIVMEAIGV QLPTSVYGPV VSIQGMPREM GGRKRSGPGV  780
LGKGFDVIKG SSEAEMSIFD GFVQAEAIRK ILGQDSSRKK REDKMKKRRE ELEQEKAANA  840
LVLPSNTIRS VMGPTGTVIT FSKDMGFPSI FDPKPSSYPP PRETCAAPSC TNPYKYRDSK  900
SKLPLCSLQC YKTDEMLFHK ANLSGHMARL TGQSLEKIYQ DTDRDLFMSA KEAKEYGLID  960
GVIMNPVKAL FNLAMLTDVD FYAPRSVIKM GSAITFTSKL KVEKWIELLV APSMNKVKIN  1020
IFGIFYIENH YKHEQDNQII LLKTKVSDFF FKMANTLFSF QNEMESFCSK YGLYQENLPD  1080
RSVNYPKYFE APPPQAPISN CDLVGDFKFN TPFLSTLPIP ETAILENIQR PAIVETQKEE  1140
QFLYSLQSLE LLNNYASGSK KLEGERNSYR GDETNVSEWK LSTEGIMSVA GERYIQFSTQ  1200
RVDEIFMFMH PYGFSFSGIS FEETRDVELA HLLLAAAEKV GNQQFESANR MLDHCEWLAS  1260
PAGNPVQRVV HYFAGALRER IDRVTGRFLS RRRPKEEEKY DMRGLGVSSN LLYLKIHQQL  1320
PFTQVILFVG IQAILESVEL ETKIHLIDLQ IRSGVQWIIL MQALADRVKY PIEYLKITAV  1380
GTAQGEKMVE TGKKLASYAK SLNLPFLYKV VLLSDMKDLK KEHFHIETCE ATAVFFQTIL  1440
RSMISMPYCL ENLMRVIRRL NPTIMVVGEV EANHNSPLFF NRFIEALFFY SAYFDCLEDC  1500
MNGDDKYRII LEGMVFRDGI HNIVAAEGEE RYNRNVKMSV WKTFFTRFGM VGIGLSESSL  1560
YQANLIVKQF SCGSSCTLES DGNFLIVGWK GSPIHSLSTW KFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-361237160027378Protein SCARECROW
5b3h_A6e-361237160026377Protein SCARECROW
5b3h_D6e-361237160026377Protein SCARECROW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364369RVPKRR
2464468KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-46RGA-like 2