PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn023491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 27789.4 Da PI: 6.2385 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.4e-15 | 59 | 107 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y GVr ++ grWv+eIr p++ ++r++lg++ ++e+Aa+a++aa +l+ge Achn023491 59 YVGVR--SRGGRWVSEIRIPKT---KTRIWLGSHHSPEKAARAYDAALYCLKGE 107 88995..779*********954...5*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.50.140 | 2.5E-17 | 1 | 48 | IPR012340 | Nucleic acid-binding, OB-fold |
SuperFamily | SSF50249 | 3.56E-16 | 1 | 48 | IPR012340 | Nucleic acid-binding, OB-fold |
Pfam | PF00366 | 7.2E-18 | 2 | 48 | IPR000266 | Ribosomal protein S17/S11 |
ProDom | PD001295 | 2.0E-15 | 2 | 45 | IPR000266 | Ribosomal protein S17/S11 |
PROSITE profile | PS51032 | 17.477 | 47 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-23 | 58 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.22E-22 | 59 | 116 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-21 | 59 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-14 | 59 | 115 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-7 | 59 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVVSNKMQKS VVVAVDRLFH HKVYDRYVKR TSKFMAHDEH NLCNIGDRKG SRRRGKGPYV 60 GVRSRGGRWV SEIRIPKTKT RIWLGSHHSP EKAARAYDAA LYCLKGEQGS FNFPNNRRPD 120 LANRSVGSLP VDEIQCIAAE FSCFDDSVAT SEPFPMSPLI EAHLSPEPPV TPDPQNVNEM 180 EANKVDDEPY FPAFMQEEEP YVPTFVPEEP YVPAYVPEAS PMLHGDLLLD EWLTLDGDWM 240 RTFH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU223880 | 2e-52 | CU223880.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6R412 | 1e-130 | A0A2R6R412_ACTCH; Ethylene-responsive transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18774 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 3e-30 | ERF family protein |