PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn023091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 158aa    MW: 17702.7 Da    PI: 7.6244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn023091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.37.2e-221564356
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ykGVr +k +g+WvAe+r p++   r+r++lg+++taeeAa+a++aa+++l+g+
  Achn023091 15 YKGVRMRK-WGKWVAEVRQPNS---RRRIWLGSYDTAEEAARAYDAAALCLRGP 64
                9*****99.*******888732...5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-341477IPR001471AP2/ERF domain
PfamPF008473.3E-161463IPR001471AP2/ERF domain
PROSITE profilePS5103223.381471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-311472IPR001471AP2/ERF domain
CDDcd000183.11E-181572No hitNo description
PRINTSPR003672.2E-101526IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-231572IPR016177DNA-binding domain
PRINTSPR003672.2E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MVKPSNSGDR ERRSYKGVRM RKWGKWVAEV RQPNSRRRIW LGSYDTAEEA ARAYDAAALC  60
LRGPSVPLNF PDYPPEIPSA SDLSPLQIQE AASRHAHRKP QPAESTGDFS GDFGCELSTT  120
TPTAITRDER SGVVEDEYHF VHVPYNWMNH LSNISTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1611711172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024968512.12e-46ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-34ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A2R6S2981e-111A0A2R6S298_ACTCH; Ethylene-responsive transcription factor
STRINGXP_006474696.15e-44(Citrus sinensis)
STRINGXP_006452852.15e-44(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.15e-27ERF family protein