PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn021251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 307aa    MW: 34782.1 Da    PI: 5.2868
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn021251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-092502832255
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yp+++++  LAk +gL+++q+ +WF N+R ++
  Achn021251 250 WPYPTEADKVALAKATGLDQKQINNWFINQRKRH 283
                 58*****************************885 PP
2ELK32.12.5e-11203224122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 E+K+ L+rKYsgy++ Lk+EFs
  Achn021251 203 EIKDKLMRKYSGYISYLKHEFS 224
                 89*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-2274118IPR005540KNOX1
PfamPF037901.3E-2175117IPR005540KNOX1
SMARTSM012564.0E-21123174IPR005541KNOX2
PfamPF037913.2E-21128173IPR005541KNOX2
SMARTSM011881.8E-6203224IPR005539ELK domain
PfamPF037899.7E-9203224IPR005539ELK domain
PROSITE profilePS5121310.092203223IPR005539ELK domain
PROSITE profilePS5007112.017223286IPR001356Homeobox domain
SMARTSM003891.8E-12225290IPR001356Homeobox domain
SuperFamilySSF466897.7E-19225298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-28228287IPR009057Homeodomain-like
CDDcd000862.14E-12235287No hitNo description
PfamPF059203.6E-17243282IPR008422Homeobox KN domain
PROSITE patternPS000270261284IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDDEAYGRLH TTADFSDNRP PPSEHLSLPV SHYPFASPPA FCDRSLMFGS SDRRVMFSAS  60
SAVSDDAAPM EVSSAVRAKI AAHPLYPKLL ESFVDCQKVG APPEMANLLD EICRENDQCR  120
RSNSGSTCID PELDEFMETY CEILAKYKAD LAKPFNEATS FLNSMETRLS DLCNDETAGS  180
SEDEFSAGET RVQECNQTGE DREIKDKLMR KYSGYISYLK HEFSKTKKKG KLPKEARKML  240
LDWWAIHYKW PYPTEADKVA LAKATGLDQK QINNWFINQR KRHWKPSDNM QFAVMDSLCG  300
PYFTND*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068158.11e-143homeobox protein knotted-1-like 6
SwissprotQ84JS61e-100KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2R6QGL90.0A0A2R6QGL9_ACTCH; Homeobox protein knotted-1-like
STRINGVIT_17s0000g08710.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-100KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]