PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn020651

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 861aa MW: 98582.7 Da PI: 6.3541

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn020651	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77	3.6e-24	182	268	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA GFs+rk+ +ks+ ng +++r+++C+keg+r+++ ++ + +r+r+ trtgC a+++++++ +gk++v+++e++HnHe+a Achn020651 182 CYNRYAALEGFSIRKDFVNKSRANGYVVSRRYTCYKEGYRRTKADT--NVKRPREDTRTGCLAHMTISRQPNGKYRVIHFETKHNHEFA 268 7**************************************99887..9999*********************************96 PP
2	FAR1	94.9	9.4e-30	315	404	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA +vGFsvrk++ +ksk++g + +r+f+C +eg+r++++++ ++ +r+r+etr+gC a+l++ ++ dgk+++t++e++HnHel+p Achn020651 315 EFYNAYAGQVGFSVRKDYVNKSKKDGAVASRRFTCFREGFRQKDRRD-SNVKRPRKETRIGCSAQLVIARQADGKYRITRFEEKHNHELVP 404 6*****************************************999.999************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-22	182	268	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.6E-27	315	404	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-31	525	619	IPR018289	MULE transposase domain
Pfam	PF04434	6.6E-6	794	840	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.829	805	841	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-5	816	843	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence Send to blast
MVGSETGTLS HSVEEEADDI SQTSTGLDFD VDLECQSLKV SAADKSGFET VGEKMCPSTE 60 VFSVDENREG IDNEQVYQSS KSSVVRSGMD KDDEHKCQSP EVSSVDKHGM DARGDQKGQN 120 SRDSLIDNHG MDIDSKLEYH CPDDQFADVS GSGYFSGNDE AETYVVPELG AEFDSEDHAY 180 RCYNRYAALE GFSIRKDFVN KSRANGYVVS RRYTCYKEGY RRTKADTNVK RPREDTRTGC 240 LAHMTISRQP NGKYRVIHFE TKHNHEFATP FTAHMLPSQR RTTFAEAVES EFANSVIDGV 300 PKLGMGFDSE DVAYEFYNAY AGQVGFSVRK DYVNKSKKDG AVASRRFTCF REGFRQKDRR 360 DSNVKRPRKE TRIGCSAQLV IARQADGKYR ITRFEEKHNH ELVPFCRVRM LRSQKRSAAV 420 EAAEVTPICS SGVQPNSTSD LIFKAVADRE GLRCHPIDYE SNLPEKRMRE MKQGESESIL 480 HYLQNKQLKD PSFFYAVQLD AEGQTTNFFW ADAKMLEDYG DFGDVVCFDT TYRLNKDYRP 540 FAPFIGVNHH KQMVVFGAAL LYDETVKSFL WLFQKFLEAM SGKKPKTILT DQDAIMAEAI 600 NSVLPEAHHR LCAWHVYQKA LKYLSETIVG LDSFASNFSS CVFSHDKEQD FVDAWKAMLD 660 VYGLWENEWL QDIFKEREKW AIPYGRHIFC ADIKGAQLSQ SFSTNLRKYL KSDLDVLQLF 720 KQFGKVVSDW RYKEIEANYD MSQRMPRLMG DVIVLKHARD LYTPTIFELF QQEYENSLNA 780 VVIQCTESQS LSEYKVNIYG QVLEHTVVFN SSEDSVVCSC MKFQFFGILC SHALKVLDYR 840 NIKVVPTRYI LKRWTKDARV *

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence Send to blast

MVGSETGTLS HSVEEEADDI SQTSTGLDFD VDLECQSLKV SAADKSGFET VGEKMCPSTE  60
VFSVDENREG IDNEQVYQSS KSSVVRSGMD KDDEHKCQSP EVSSVDKHGM DARGDQKGQN  120
SRDSLIDNHG MDIDSKLEYH CPDDQFADVS GSGYFSGNDE AETYVVPELG AEFDSEDHAY  180
RCYNRYAALE GFSIRKDFVN KSRANGYVVS RRYTCYKEGY RRTKADTNVK RPREDTRTGC  240
LAHMTISRQP NGKYRVIHFE TKHNHEFATP FTAHMLPSQR RTTFAEAVES EFANSVIDGV  300
PKLGMGFDSE DVAYEFYNAY AGQVGFSVRK DYVNKSKKDG AVASRRFTCF REGFRQKDRR  360
DSNVKRPRKE TRIGCSAQLV IARQADGKYR ITRFEEKHNH ELVPFCRVRM LRSQKRSAAV  420
EAAEVTPICS SGVQPNSTSD LIFKAVADRE GLRCHPIDYE SNLPEKRMRE MKQGESESIL  480
HYLQNKQLKD PSFFYAVQLD AEGQTTNFFW ADAKMLEDYG DFGDVVCFDT TYRLNKDYRP  540
FAPFIGVNHH KQMVVFGAAL LYDETVKSFL WLFQKFLEAM SGKKPKTILT DQDAIMAEAI  600
NSVLPEAHHR LCAWHVYQKA LKYLSETIVG LDSFASNFSS CVFSHDKEQD FVDAWKAMLD  660
VYGLWENEWL QDIFKEREKW AIPYGRHIFC ADIKGAQLSQ SFSTNLRKYL KSDLDVLQLF  720
KQFGKVVSDW RYKEIEANYD MSQRMPRLMG DVIVLKHARD LYTPTIFELF QQEYENSLNA  780
VVIQCTESQS LSEYKVNIYG QVLEHTVVFN SSEDSVVCSC MKFQFFGILC SHALKVLDYR  840
NIKVVPTRYI LKRWTKDARV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122937.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6RZ12	0.0	A0A2R6RZ12_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_008230452.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-127	FAR1-related sequence 5