PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn020551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 298aa    MW: 33380 Da    PI: 7.6771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn020551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-1693138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
       Achn020551  93 RGHWKPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 138
                      899*****************************.***********996 PP
2Myb_DNA-binding55.51.4e-17145188146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
       Achn020551 145 RRAFSEEEEERLLAAHRAYGNK-WAMIARLFP-GRTDNAVKNHWHV 188
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.27488139IPR017930Myb domain
SMARTSM007172.1E-1492141IPR001005SANT/Myb domain
PfamPF002493.7E-1693138IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-2893186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-2694146IPR009057Homeodomain-like
CDDcd001671.64E-1396137No hitNo description
PROSITE profilePS5129426.374140194IPR017930Myb domain
SMARTSM007178.5E-15144192IPR001005SANT/Myb domain
PfamPF002494.4E-14145187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20147193IPR009057Homeodomain-like
CDDcd001672.78E-7156187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTLQQQYTTS CHQENDNGTP NHTHYYYNNI NTIYTPPPPS ELLLDANMGS LSLNPCSYTA  60
TELLHYYHNN SEEGDIAKAS KITDAKDLKL CGRGHWKPAE DSKLKELVAL YGPQNWNLIA  120
EKLEGRSGKS CRLRWFNQLD PRINRRAFSE EEEERLLAAH RAYGNKWAMI ARLFPGRTDN  180
AVKNHWHVIM ARKYREQSAA YRKRKLSQEE GTSVSWRGTT TTGTEPNSFT PQNTQFAVSN  240
MGGFYYGGFN SVASDNTVTV SEPSSSSSPS VAAHQNTSHF ETTLSPPFID FLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32931937107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661075.16e-86PREDICTED: transcription factor MYB35
RefseqXP_010661076.16e-86PREDICTED: transcription factor MYB35
TrEMBLA0A2R6PA660.0A0A2R6PA66_ACTCH; Transcription factor like
STRINGVIT_14s0108g01010.t012e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.12e-62myb domain protein 117