PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn019771

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 847aa MW: 96521.4 Da PI: 6.7043

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn019771	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.9	1.1e-30	138	230	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk ++ +gkw+v+ +++eHnHel+p Achn019771 138 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQDsSGKWVVSGFVKEHNHELVP 230 9*************************************998888545677889*************99***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-29	138	230	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-32	351	443	IPR018289	MULE transposase domain
Pfam	PF04434	9.2E-12	619	665	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.251	631	667	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	642	669	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MEKSGEKREE FKPIMGYGCY AMTVKGQGGA RVRRPLVASG WDILNILWEL YLIGGGLCKL 60 NMESEVIEFD IGLGGGGGAG SGSGDDDMDG EHPVMDDDMA DSSPPGGAFG AIYIPEGDPD 120 LEPYENMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK DGAIIQRSFV CAKEGFRNLN 180 EKRTKDREIK RPRTITRVGC KASLSVKIQD SSGKWVVSGF VKEHNHELVP PDQVHCLRSH 240 RQISGPAKTL IDTLQAAGMG PRKIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSFEGE 300 IQLLLDYLRQ MHAENPSFFY AVQGDEDQCT GNVLWADPKA RMNYTYFADT VTFDTTYRSN 360 RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFVWLFNT WLMAMSGRPP VSITTDYDMV 420 IRSAIMQVFP ETRHRFCKWH IFKKCQEKLS IVFLQHPNFE ADFHKCVNLT DSIEEFESCW 480 LSLVDKYDLR DHEWLQTIYS ARKQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN 540 LNQFFKLYEK ALESRNEKEV KADYDTMNTS PVLKTPSPME KQASELYTRK LFVRFQEELV 600 GTLTFMASKV DDDGEVTTYQ VAKFGEDHKA YYVKFNVLEM RATCSCQMFE FSGLLCRHVL 660 AVFRVTNVLT LPSHYILKRW TRNAKSTIIL EERATGVFNS YLESHTVRFN TLRHEAFKFV 720 DEGAESIDSY NMAMVALQEA SKRVAFATKN EGKTPMINGR IREDSTNGGS PANICSDDHP 780 KSNSQQFSED DMDKKIKDLT HELDCANRKC EVYRANLLSV LRDIEDHKQQ LSVKVQNVKL 840 SMKDVL*

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MEKSGEKREE FKPIMGYGCY AMTVKGQGGA RVRRPLVASG WDILNILWEL YLIGGGLCKL  60
NMESEVIEFD IGLGGGGGAG SGSGDDDMDG EHPVMDDDMA DSSPPGGAFG AIYIPEGDPD  120
LEPYENMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK DGAIIQRSFV CAKEGFRNLN  180
EKRTKDREIK RPRTITRVGC KASLSVKIQD SSGKWVVSGF VKEHNHELVP PDQVHCLRSH  240
RQISGPAKTL IDTLQAAGMG PRKIMSALIK EYGGISKVGF TEVDCRNYMR NNRQRSFEGE  300
IQLLLDYLRQ MHAENPSFFY AVQGDEDQCT GNVLWADPKA RMNYTYFADT VTFDTTYRSN  360
RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFVWLFNT WLMAMSGRPP VSITTDYDMV  420
IRSAIMQVFP ETRHRFCKWH IFKKCQEKLS IVFLQHPNFE ADFHKCVNLT DSIEEFESCW  480
LSLVDKYDLR DHEWLQTIYS ARKQWVPVYL RDTFFAEMSI TQRSDSMNSY FDGYVNASTN  540
LNQFFKLYEK ALESRNEKEV KADYDTMNTS PVLKTPSPME KQASELYTRK LFVRFQEELV  600
GTLTFMASKV DDDGEVTTYQ VAKFGEDHKA YYVKFNVLEM RATCSCQMFE FSGLLCRHVL  660
AVFRVTNVLT LPSHYILKRW TRNAKSTIIL EERATGVFNS YLESHTVRFN TLRHEAFKFV  720
DEGAESIDSY NMAMVALQEA SKRVAFATKN EGKTPMINGR IREDSTNGGS PANICSDDHP  780
KSNSQQFSED DMDKKIKDLT HELDCANRKC EVYRANLLSV LRDIEDHKQQ LSVKVQNVKL  840
SMKDVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028064185.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2R6R750	0.0	A0A2R6R750_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	EOX98949	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]