PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn019631

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 940aa MW: 104593 Da PI: 6.1147

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn019631	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.9	8.3e-28	619	669	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yFs+++kdAAk+Lgvc+T+LKriCR +GI RWP+Rk+k++ Achn019631 619 EKSISLQVLRQYFSGSLKDAAKSLGVCPTTLKRICRLHGITRWPSRKLKKV 669 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.984	608	689	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-24	622	669	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.45E-23	839	927	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.5E-25	839	922	No hit	No description
PROSITE profile	PS51745	21.472	841	924	IPR000270	PB1 domain
SMART	SM00666	2.3E-26	841	924	IPR000270	PB1 domain
Pfam	PF00564	1.1E-18	842	922	IPR000270	PB1 domain
CDD	cd06407	3.45E-40	842	923	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MEDGSFTPNT LLETLSDNTM DFDLMDELFY DGYWLETTEG PNFWQSGLST SDDLNFSSYS 60 GPTSEPNTVH LNPNPHHKSH QEQAEISDLS NNLHLVCPQM DELVGSQTQN REVILVAATS 120 GQSETFLVES SETNRRLWIP PSEDASRSYP VKKRLMQAIE HLRQSTSDRD VLIQIWVPIT 180 RGGKQFLTTN NQPFALNPNC KNLAAYRSVS MGYQFATEEN SKDFVGLPGR VFLTELPEWT 240 PDVRFFRREE YPRVKYAQQL DVMGSLALPV FEQGSGTCLG VVEMVTTSQK AKYRPELESV 300 CKALEACDDS YQAALTEIQE VLKSVCDTNG LPLAQTWAPC IQHGKAGCRH SSENYAACVS 360 TVDSAWYVRN QQVLEFHEAC SEHHLLRGEG VAGGAFMTNR VCFSNDITTL SKIRYPLSHH 420 ARLFGLRAAI AIRLRSIYAE SADFVLEFFL TSDFQNTGEQ GNVLSSLSSA IHQVCRSLRL 480 VTDQELEEET AFQERVIVAP SDGSLDEDHA QILGYSLSKE SSQKESSWIA DMMEAQRKGK 540 TVSVSLGYRK EEPKKDFKET WDIDGMDLYR RNAFSEHKQI YQDSGPKGNA ESGGDFSSVS 600 RHSLSGVRKA GERRRTKSEK SISLQVLRQY FSGSLKDAAK SLGVCPTTLK RICRLHGITR 660 WPSRKLKKVG HSLKKLQLII DSVQGVEGSF QLSSFYSNFP DLSSPNLPGT SPVSTSNIND 720 QLKQFNTQPK GSLLSPVTTT SKSPSSSCSH SSTSSFYCST ETKQPPATVH ALGGGDSLLE 780 EHPGGILKRA HSDAELHDAG QEETKLLVRS HSHKFFSELP SSEALPSLPK VGGQVFRDGS 840 GFRVKATFGE EKIRFSIQQN WGFGDLQQEI VKRFNIDENN KINLKYLDDD SEWVLLTCDA 900 DLEECMDIHR SSRSRTIKLS VYQAINPNFG SSFGSSGPS*

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MEDGSFTPNT LLETLSDNTM DFDLMDELFY DGYWLETTEG PNFWQSGLST SDDLNFSSYS  60
GPTSEPNTVH LNPNPHHKSH QEQAEISDLS NNLHLVCPQM DELVGSQTQN REVILVAATS  120
GQSETFLVES SETNRRLWIP PSEDASRSYP VKKRLMQAIE HLRQSTSDRD VLIQIWVPIT  180
RGGKQFLTTN NQPFALNPNC KNLAAYRSVS MGYQFATEEN SKDFVGLPGR VFLTELPEWT  240
PDVRFFRREE YPRVKYAQQL DVMGSLALPV FEQGSGTCLG VVEMVTTSQK AKYRPELESV  300
CKALEACDDS YQAALTEIQE VLKSVCDTNG LPLAQTWAPC IQHGKAGCRH SSENYAACVS  360
TVDSAWYVRN QQVLEFHEAC SEHHLLRGEG VAGGAFMTNR VCFSNDITTL SKIRYPLSHH  420
ARLFGLRAAI AIRLRSIYAE SADFVLEFFL TSDFQNTGEQ GNVLSSLSSA IHQVCRSLRL  480
VTDQELEEET AFQERVIVAP SDGSLDEDHA QILGYSLSKE SSQKESSWIA DMMEAQRKGK  540
TVSVSLGYRK EEPKKDFKET WDIDGMDLYR RNAFSEHKQI YQDSGPKGNA ESGGDFSSVS  600
RHSLSGVRKA GERRRTKSEK SISLQVLRQY FSGSLKDAAK SLGVCPTTLK RICRLHGITR  660
WPSRKLKKVG HSLKKLQLII DSVQGVEGSF QLSSFYSNFP DLSSPNLPGT SPVSTSNIND  720
QLKQFNTQPK GSLLSPVTTT SKSPSSSCSH SSTSSFYCST ETKQPPATVH ALGGGDSLLE  780
EHPGGILKRA HSDAELHDAG QEETKLLVRS HSHKFFSELP SSEALPSLPK VGGQVFRDGS  840
GFRVKATFGE EKIRFSIQQN WGFGDLQQEI VKRFNIDENN KINLKYLDDD SEWVLLTCDA  900
DLEECMDIHR SSRSRTIKLS VYQAINPNFG SSFGSSGPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028099682.1	0.0	protein NLP2-like
Refseq	XP_028099683.1	0.0	protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2R6R730	0.0	A0A2R6R730_ACTCH; Uncharacterized protein
STRING	VIT_03s0038g03710.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein