PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn018291
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 269aa    MW: 29664.2 Da    PI: 6.3513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn018291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.1e-122063144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +g W++eEd++l  +    G g+W+ +ar  g+ R++k+c++rw
       Achn018291 20 KGLWSPEEDDKLMSYMLGNGQGCWSDVARNAGLQRCGKSCRLRW 63
                     678***************************************** PP

2Myb_DNA-binding24.18.3e-0862842346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia++++ gRt++++k++w++
       Achn018291 62 RWSQIAARLP-GRTDNEIKNFWNS 84
                     4*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.471571IPR017930Myb domain
SMARTSM007171.3E-81988IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-151963IPR009057Homeodomain-like
PfamPF002491.3E-102063IPR001005SANT/Myb domain
SuperFamilySSF466897.94E-162087IPR009057Homeodomain-like
CDDcd001676.55E-82383No hitNo description
Gene3DG3DSA:1.10.10.602.4E-116497IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRKPDSSCKN NNSNMSKMRK GLWSPEEDDK LMSYMLGNGQ GCWSDVARNA GLQRCGKSCR  60
LRWSQIAARL PGRTDNEIKN FWNSTIKKRL KKSSSTPSSN ASDSSSDLIR GLMYMDSSSS  120
SLALNHAINP LMPVFGSGLN VSSAHNVPTM FMPQVGMDGD DFYGSSHGLI GGDINLGIDR  180
DLFVPPLESL SIINNAKTEN LTNKSNNHTN FLNNTSSVIN HCNNNCKIES IEGFETCWQG  240
EDLKVGEWDL ESLMRDVSSF PFLDFQGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068093.11e-100transcription factor MYB46-like
TrEMBLA0A2R6QTU81e-177A0A2R6QTU8_ACTCH; Transcription factor like
STRINGcassava4.1_011597m1e-79(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-40myb domain protein 83