PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn018291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 29664.2 Da PI: 6.3513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.9 | 4.1e-12 | 20 | 63 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g W++eEd++l + G g+W+ +ar g+ R++k+c++rw Achn018291 20 KGLWSPEEDDKLMSYMLGNGQGCWSDVARNAGLQRCGKSCRLRW 63 678***************************************** PP | |||||||
2 | Myb_DNA-binding | 24.1 | 8.3e-08 | 62 | 84 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W+ Ia++++ gRt++++k++w++ Achn018291 62 RWSQIAARLP-GRTDNEIKNFWNS 84 4*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.47 | 15 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-8 | 19 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-15 | 19 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-10 | 20 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.94E-16 | 20 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.55E-8 | 23 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-11 | 64 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MRKPDSSCKN NNSNMSKMRK GLWSPEEDDK LMSYMLGNGQ GCWSDVARNA GLQRCGKSCR 60 LRWSQIAARL PGRTDNEIKN FWNSTIKKRL KKSSSTPSSN ASDSSSDLIR GLMYMDSSSS 120 SLALNHAINP LMPVFGSGLN VSSAHNVPTM FMPQVGMDGD DFYGSSHGLI GGDINLGIDR 180 DLFVPPLESL SIINNAKTEN LTNKSNNHTN FLNNTSSVIN HCNNNCKIES IEGFETCWQG 240 EDLKVGEWDL ESLMRDVSSF PFLDFQGE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028068093.1 | 1e-100 | transcription factor MYB46-like | ||||
TrEMBL | A0A2R6QTU8 | 1e-177 | A0A2R6QTU8_ACTCH; Transcription factor like | ||||
STRING | cassava4.1_011597m | 1e-79 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 2e-40 | myb domain protein 83 |