PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn018201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 733aa    MW: 84763.5 Da    PI: 8.533
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn018201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.55.4e-2428110591
        FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 +YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk++ +gkw+++++ +eHnHel p
  Achn018201  28 KYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGKWYIHSFIKEHNHELLP 110
                 7************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-2228110IPR004330FAR1 DNA binding domain
PfamPF105512.6E-27223316IPR018289MULE transposase domain
CDDcd005310.00716347437No hitNo description
PROSITE profilePS5096610.287503539IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-9509537IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-7514541IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MTINDLDGYR CPTHKGPPTH DRMPKEMKYA KSVGFGTAKL SSRRSRASKE FIDAKFSCIR  60
YGNKQQSDDA INPRPSPKIG CKASMHVKRR PNGKWYIHSF IKEHNHELLP AQAHFFRSHR  120
NVDPLKNDAK VRRRKILAAV SKQYGAYQYP GSLENHIRNQ HDKGRILTLE EGDAQMLLEL  180
FMHMQEENPK FFYAVDMNEE HRLRNVFWVD AKGMDDYTNF GDVVSFDTTY FMNKYKIPLV  240
LFVGVNHHIQ PTLLGCALIV DETVYTFVWL LQSWCLSMGG RAPRVILTDQ NNPLKAAIAA  300
VFPETRHCFS LWHLMEKIPR QLDYLSLWHD TFMAKFNKCI YRSWTEEQFE KRWWKLLDRF  360
NLRDDEWMQS LYKDCKLWVP TFMRDISFAG LSTASRSESL SSFVDKYVHG ETCLRDFLGK  420
YKVILEDRHE EEAKANFDAW HETPELKSPS PFEKQMSMIY TQEIFKKFQV EVLGAAACQL  480
KKEKEDEIAI TYAVKDFEDN QDFMVEWSES KSEICCSCRW FEYNGYLCRH AIVVLQMSGV  540
FSIPFKYILQ RWTNAATSRH AISERLDEIQ SKVRRYNDLC RRAIILGEEG SLSQESYNIA  600
LGAIKEALKQ CAGVNNSAEN DSRPSTLPTL AICGSELENQ GCATTCKEHA TNLQMSNSNK  660
TSKRVQSGKE KANNDNDGNK RRKVLSTLRP TQLLDIVPAN FHNVVTTMFS NNTPTQFHNV  720
ASTHVHDSRL PR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062115.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A2R6QTS70.0A0A2R6QTS7_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_09s0054g01830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.20.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]