PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn017391

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ARF

Protein Properties

Length: 801aa MW: 88992.4 Da PI: 5.7842

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn017391	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75	8.9e-24	160	261	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+ Achn017391 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 255 99***************************7333.34459********************************************..449999 PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ Achn017391 256 VGVRRA 261 ***996 PP
2	Auxin_resp	117.9	8.5e-39	286	368	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha +t+++F+v+Y+Pr+s++eF+v+++++++++k ++s+GmRfkm+fe+e+++e+r++Gt+vg++d+d+ rW++SkWr+Lk Achn017391 286 AWHAYTTGTIFTVYYKPRTSPAEFIVPYNQYMESVKYNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSRRWQESKWRCLK 368 79*******************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-42	151	275	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.67E-41	156	289	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.86E-22	158	260	No hit	No description
Pfam	PF02362	1.1E-21	160	261	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.012	160	262	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-23	160	262	IPR003340	B3 DNA binding domain
Pfam	PF06507	7.7E-36	286	368	IPR010525	Auxin response factor
PROSITE profile	PS51745	22.572	674	758	IPR000270	PB1 domain
SuperFamily	SSF54277	9.51E-10	676	751	No hit	No description
Pfam	PF02309	3.8E-5	719	759	IPR033389	AUX/IAA domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence Send to blast
MAASEVSYRG NARGESFSSD YCDPNDGGAG EGNSGGFAHF SGEIPASYVD PETALYTELW 60 RACAGPLVTV PGGGERVFYF PQGHIEQVEA STNQVSDQEM PVYNLPSKIL CRVINVQLKA 120 EPDTDEVFAQ VTLLPLKEDD NDTEKEHVPP SQPRFQVHSF CKTLTASDTS THGGFSVLRR 180 HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA 240 GDAFIFLRGE NGELRVGVRR AMRQQGNIPS SVISSHSMHL GVLATAWHAY TTGTIFTVYY 300 KPRTSPAEFI VPYNQYMESV KYNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDADSRRWQ 360 ESKWRCLKVR WDENSTIPRP ERVSPWKIEP ASTPPTNNPL PVPRLKRPRT SLVPSSPDSS 420 VLTREGSSKL TIDPLPASGF TRVLQSRELS TLRGTFAESN ELDSSEKAVV WPRSLDDEKI 480 DVVSASQRCG SDKWLPLLGP ESTFTDLLSG FGTRSNSSRE FCAPPIDQNS GYISSTKLNF 540 PQTNWSVISS GLSFNLLESS MKTPAQGSDV PHQTRDVRNG NFGDYSLLTG QKAEHLQGNW 600 LMPPPALSIE KRTSSVGHAN IDFPSQQSGV SESVQSSDQK KFVKAPEYPL PSCEQEKPSQ 660 IRDHQGKVQG GSTRSCTKVH KQGVALGRSV DLTKFSNYEE FIAELDQLFE FNGELKAGTK 720 NWLIVFTDDE GDMMLVGDDP WPEFCGMARK VYIYTREEVK QMLPGTLSSK NEENSLVGEG 780 NDDKDAKNLI PSSDSSPEKC *

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence Send to blast

MAASEVSYRG NARGESFSSD YCDPNDGGAG EGNSGGFAHF SGEIPASYVD PETALYTELW  60
RACAGPLVTV PGGGERVFYF PQGHIEQVEA STNQVSDQEM PVYNLPSKIL CRVINVQLKA  120
EPDTDEVFAQ VTLLPLKEDD NDTEKEHVPP SQPRFQVHSF CKTLTASDTS THGGFSVLRR  180
HADECLPPLD MSRQPPTQEL VAKDLHGNEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA  240
GDAFIFLRGE NGELRVGVRR AMRQQGNIPS SVISSHSMHL GVLATAWHAY TTGTIFTVYY  300
KPRTSPAEFI VPYNQYMESV KYNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDADSRRWQ  360
ESKWRCLKVR WDENSTIPRP ERVSPWKIEP ASTPPTNNPL PVPRLKRPRT SLVPSSPDSS  420
VLTREGSSKL TIDPLPASGF TRVLQSRELS TLRGTFAESN ELDSSEKAVV WPRSLDDEKI  480
DVVSASQRCG SDKWLPLLGP ESTFTDLLSG FGTRSNSSRE FCAPPIDQNS GYISSTKLNF  540
PQTNWSVISS GLSFNLLESS MKTPAQGSDV PHQTRDVRNG NFGDYSLLTG QKAEHLQGNW  600
LMPPPALSIE KRTSSVGHAN IDFPSQQSGV SESVQSSDQK KFVKAPEYPL PSCEQEKPSQ  660
IRDHQGKVQG GSTRSCTKVH KQGVALGRSV DLTKFSNYEE FIAELDQLFE FNGELKAGTK  720
NWLIVFTDDE GDMMLVGDDP WPEFCGMARK VYIYTREEVK QMLPGTLSSK NEENSLVGEG  780
NDDKDAKNLI PSSDSSPEKC *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-176	54	393	18	357	Auxin response factor 1
4ldw_A	1e-176	54	393	18	357	Auxin response factor 1
4ldw_B	1e-176	54	393	18	357	Auxin response factor 1
4ldx_A	1e-176	54	393	18	357	Auxin response factor 1
4ldx_B	1e-176	54	393	18	357	Auxin response factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255\|RuleBase:RU004561, ECO:0000269\|PubMed:26716451, ECO:0000269\|PubMed:26959229}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269\|PubMed:26716451}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028057168.1	0.0	auxin response factor 2B-like
Swissprot	K4DF01	0.0	ARF2B_SOLLC; Auxin response factor 2B
TrEMBL	A0A2R6PDE2	0.0	A0A2R6PDE2_ACTCH; Auxin response factor
STRING	VIT_17s0000g00320.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2618	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	auxin response factor 2

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Breitel DA, et al. AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening. PLoS Genet., 2016. 12(3): p. e1005903 [PMID:26959229]