PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn017371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 429aa    MW: 48571.5 Da    PI: 7.759
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn017371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.81.3e-2240133185
    trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                 rWt+qe+l Lie+++  e+r r++          + + +W++vs+++re g++r+p+qC+++w+nl ++++k+k++e++ + +++s + + +++
  Achn017371  40 RWTRQETLILIEGKQIAENRGRKRHisgsicgldQLESKWDAVSSFCREYGVNRGPVQCRKRWSNLVGDFRKLKAWESQVKGTAESFWMMRNDV 133
                 8*********************97555667777799******************************************9988887777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.07333106IPR017877Myb-like domain
PfamPF138379.3E-1139130No hitNo description
Gene3DG3DSA:1.10.10.602.0E-540105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAPETNDVHE LDAHPTNEVN GKQATIEGTN DKSKSQRHPR WTRQETLILI EGKQIAENRG  60
RKRHISGSIC GLDQLESKWD AVSSFCREYG VNRGPVQCRK RWSNLVGDFR KLKAWESQVK  120
GTAESFWMMR NDVKREKKLP SFFDREVYDV LDGRAFTATA YPLTLVTITA DAKYGNGLEA  180
VVEEEEDVGE EAEAVFDSTR DVASKNGMLS DFQQLEQEGN GRCPEKQAKT VPSPMPISEK  240
HYQPFCQAYS NQDTRKGKQL GLNSWRGSMS QEGWKKKRLS LDGCGDTNLE EQLVKVLEKN  300
SSMLNAQLEA QNMNYQLDRE QRKDQNDSLV AALNTRKGKQ LGLNSWRGSM SQEGWKKKRL  360
SLDGCGDTNL EEQLVKVLEK KSSMLNAQLE AQNMNYQLDR EQRKDQNDSL VAALSKIKDA  420
LGRIVDKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280881.11e-124PREDICTED: trihelix transcription factor ASR3 isoform X1
TrEMBLA0A2R6QG640.0A0A2R6QG64_ACTCH; Trihelix transcription factor
STRINGVIT_17s0000g00270.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-77Trihelix family protein