PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn016511

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SBP

Protein Properties

Length: 916aa MW: 101097 Da PI: 7.6323

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn016511	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	40.2	9e-13	145	174	1	30
--SSTT-----TT--HHHHHTT--HHHHT- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhska 30 +Cqv++C++dls+ak+yhrrhkvCevhsk+ Achn016511 145 MCQVDNCREDLSNAKDYHRRHKVCEVHSKS 174 6***************************97 PP
2	SBP	31.2	5.8e-10	174	199	53	78
TT--SS--S-STTTT-------S--- CS SBP 53 sefDeekrsCrrrLakhnerrrkkqa 78 s+fDe+krsCrrrLa+hn+rrrk+q+ Achn016511 174 SKFDEGKRSCRRRLAGHNRRRRKSQT 199 68*********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.9E-13	140	174	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	18.272	143	197	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-21	144	200	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-7	146	174	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	7.31E-6	707	808	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MEEVGAQVAP PIFMHQNLGG RFCEGHSMTK KRGQPNFHHQ QPRLTSGYGW NPNGWDWDSV 60 RFVAKPLESD VLCLGTARSF QSEQQRTSDE EVSGVPTSLE KNSVVDDDES LRLKLGGSLN 120 SSEEPMSKPN KRVRSGSPGG GNYPMCQVDN CREDLSNAKD YHRRHKVCEV HSKSKFDEGK 180 RSCRRRLAGH NRRRRKSQTE DVSSRILLSG NHSSHNGDLD IVNLLTVLAQ AQGHKEVKST 240 NCSTLPNKDH LLQIISKINS LPLPVDIEAK LPAPGSLSKT VPEQASSDNQ IRLNANTPSS 300 STKDLLAVLS ATLASPSPNA LAILSQRSSQ GVDADDTKLA CLDQALSLNM QNGAALQFPS 360 VGGERSSTSY QSPVEDSDCQ VQETRTNLPL QLFSSSREDG SPPKLACARK YFSSDSSNAI 420 EDSSPSSSPP VAQKLFPMQT TRETEPKRLS TGRKNAYVET SKAQGCVTSL ELFGLSHRGA 480 DNSSFQSLPY QAGYTSSSGS DHSPSSLNSD AQDRTGRMIF KLFGKNPSQL PETLRTQIYN 540 WLSHSPSEME SYIRPGCVIL SIYLSMTYSA WEQVENGFKG TSFPVIIADA TICKELRLLE 600 SEFGEGAKVH DTISEEQIHD FGQPQSKEEV LHFLNELGWL FQRKRNSSTF DTPNYTLARF 660 KFLFLFSVER NCCALVKTLL DILLERDLHR GEPSKESLDM LSEIHLLNRA VKRRCKNMVD 720 LLIHYPVPSG DDTLKYIFPP NLVGPGGVTP LHLAACTSSS DDVVDALTGD PQEIGLHCWN 780 SLLDTNGLSP YAYALMRNNH SYNRLVARKL ADRKNGQVSV SVATEIETQW SGMSQDHHPR 840 PLFKQGQKSC SKCAVVASRY NRRIPVSQGF LHQSYMLSML AVAAVCVCVC LFLRGHPDVG 900 LVAPFRWENL GYGPS*

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MEEVGAQVAP PIFMHQNLGG RFCEGHSMTK KRGQPNFHHQ QPRLTSGYGW NPNGWDWDSV  60
RFVAKPLESD VLCLGTARSF QSEQQRTSDE EVSGVPTSLE KNSVVDDDES LRLKLGGSLN  120
SSEEPMSKPN KRVRSGSPGG GNYPMCQVDN CREDLSNAKD YHRRHKVCEV HSKSKFDEGK  180
RSCRRRLAGH NRRRRKSQTE DVSSRILLSG NHSSHNGDLD IVNLLTVLAQ AQGHKEVKST  240
NCSTLPNKDH LLQIISKINS LPLPVDIEAK LPAPGSLSKT VPEQASSDNQ IRLNANTPSS  300
STKDLLAVLS ATLASPSPNA LAILSQRSSQ GVDADDTKLA CLDQALSLNM QNGAALQFPS  360
VGGERSSTSY QSPVEDSDCQ VQETRTNLPL QLFSSSREDG SPPKLACARK YFSSDSSNAI  420
EDSSPSSSPP VAQKLFPMQT TRETEPKRLS TGRKNAYVET SKAQGCVTSL ELFGLSHRGA  480
DNSSFQSLPY QAGYTSSSGS DHSPSSLNSD AQDRTGRMIF KLFGKNPSQL PETLRTQIYN  540
WLSHSPSEME SYIRPGCVIL SIYLSMTYSA WEQVENGFKG TSFPVIIADA TICKELRLLE  600
SEFGEGAKVH DTISEEQIHD FGQPQSKEEV LHFLNELGWL FQRKRNSSTF DTPNYTLARF  660
KFLFLFSVER NCCALVKTLL DILLERDLHR GEPSKESLDM LSEIHLLNRA VKRRCKNMVD  720
LLIHYPVPSG DDTLKYIFPP NLVGPGGVTP LHLAACTSSS DDVVDALTGD PQEIGLHCWN  780
SLLDTNGLSP YAYALMRNNH SYNRLVARKL ADRKNGQVSV SVATEIETQW SGMSQDHHPR  840
PLFKQGQKSC SKCAVVASRY NRRIPVSQGF LHQSYMLSML AVAAVCVCVC LFLRGHPDVG  900
LVAPFRWENL GYGPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-17	136	196	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	708	713	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107208.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	1e-156	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2R6PZB2	0.0	A0A2R6PZB2_ACTCH; Squamosa promoter-binding-like protein
STRING	VIT_18s0122g00380.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-127	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]