PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn015021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 186aa MW: 20442.7 Da PI: 5.07 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 39 | 84 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+ +l+ +a + ++ + +W ar +g g+t +++k ++ + Achn015021 39 TWTPKQNKLFENALAVYPQDtpdRWQNLARAVG-GKTVEEVKGHYEM 84 7********************************.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.066 | 35 | 90 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5E-6 | 36 | 88 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.06E-11 | 38 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.27E-6 | 39 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MDKSVKADFV RSNSQHKTVQ DFLLISTSNI CIEMGSNSTW TPKQNKLFEN ALAVYPQDTP 60 DRWQNLARAV GGKTVEEVKG HYEMLVEDVN HIESGQVPLP TYKPAGRSIK GYQFIDEEER 120 GEFYPTCDKW YQSRPGLLSA SHQAPPSGGV GRVTGRDEGV TSLGGEVCHV GTNPTSDREG 180 EVLDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-29 | 35 | 110 | 6 | 81 | RADIALIS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 9e-32 | RAD-like 6 |