PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn013291

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB

Protein Properties

Length: 432aa MW: 46480.7 Da PI: 6.7855

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn013291	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	68	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar + gR++k+c++rw + Achn013291 68 KGPWSPEEDAILSRLVSNFGARNWSLIARGIA-GRSGKSCRLRWCNQ 113 79****************************.*********985 PP
2	Myb_DNA-binding	60.5	3.7e-19	120	164	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd l+v+a++ +G++ W++Iar ++ gRt++ +k++w++ Achn013291 120 RKPFTDEEDRLIVQAHTIHGNK-WASIARLLP-GRTDNAIKNHWNST 164 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.805	65	114	IPR017930	Myb domain
SuperFamily	SSF46689	5.39E-30	66	161	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-14	67	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.1E-26	69	121	IPR009057	Homeodomain-like
CDD	cd00167	3.30E-13	70	112	No hit	No description
Pfam	PF13921	4.3E-16	71	129	No hit	No description
PROSITE profile	PS51294	28.076	115	169	IPR017930	Myb domain
SMART	SM00717	3.4E-17	119	167	IPR001005	SANT/Myb domain
CDD	cd00167	5.24E-13	122	165	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-24	122	168	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MATDTEMDDL KVVAGDSTTA EDDGADAGGG GDGEGQNEDV DVAVVGEGSG SSGGGRGRVG 60 RKFGDRVKGP WSPEEDAILS RLVSNFGARN WSLIARGIAG RSGKSCRLRW CNQLDPSVKR 120 KPFTDEEDRL IVQAHTIHGN KWASIARLLP GRTDNAIKNH WNSTLRRRCI GRGKLKLESS 180 NAVEDISIDR SKASSEETLS CGDVNSFKSL EGKDVSSRES LEEQLEDKAQ PQGQSSDKAK 240 EPPTLFRPVA RVSAFNVFNP SNGPETVSAF PRPIPRQGPS VQASPDAGIY KLLEGAYGER 300 LIPQQCGHGC CETESVGKPR RSLLGPEFVD YAEPPFFPSH ELAAIATDIS NIAWQKSGLE 360 SSSVRAVENV NVRIGSGGPL VQMDHFEERR KKGRLRFEEG KNKLMGMVTD VLSTSTGRQT 420 SSVSAKVGGW T*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MATDTEMDDL KVVAGDSTTA EDDGADAGGG GDGEGQNEDV DVAVVGEGSG SSGGGRGRVG  60
RKFGDRVKGP WSPEEDAILS RLVSNFGARN WSLIARGIAG RSGKSCRLRW CNQLDPSVKR  120
KPFTDEEDRL IVQAHTIHGN KWASIARLLP GRTDNAIKNH WNSTLRRRCI GRGKLKLESS  180
NAVEDISIDR SKASSEETLS CGDVNSFKSL EGKDVSSRES LEEQLEDKAQ PQGQSSDKAK  240
EPPTLFRPVA RVSAFNVFNP SNGPETVSAF PRPIPRQGPS VQASPDAGIY KLLEGAYGER  300
LIPQQCGHGC CETESVGKPR RSLLGPEFVD YAEPPFFPSH ELAAIATDIS NIAWQKSGLE  360
SSSVRAVENV NVRIGSGGPL VQMDHFEERR KKGRLRFEEG KNKLMGMVTD VLSTSTGRQT  420
SSVSAKVGGW T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-39	65	168	4	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028078722.1	0.0	transcription factor MYB1-like
Swissprot	Q42575	1e-109	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A2R6RX54	0.0	A0A2R6RX54_ACTCH; Transcription factor like
STRING	VIT_08s0007g01540.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2611	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-107	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]