PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn012501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 472aa MW: 53255.1 Da PI: 6.0371 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 466.9 | 1.2e-142 | 46 | 468 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+cA+ v++g+le+a+ +L ++s+laspdgd+mqR+a+yfteALa+r++++++++ykal++++ s +see+ ++klf+e +P+lk++++++N Achn012501 46 LIHLLLACANYVATGSLENANITLDQISQLASPDGDTMQRIASYFTEALAERILKNWPGIYKALHSTRIS--LVSEEILVRKLFYESFPFLKVAFVITN 142 689*************************************************************999887..7************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaI ea+ege++vHiiD+++ +++QW aLlq L+sRpegpp+lRiTgv++ +ke le++++ L++ Ae+l++pf+fn ++++led+++e+Lrvk+ Achn012501 143 QAIIEAMEGEKMVHIIDLNAAEPAQWRALLQDLSSRPEGPPHLRITGVHQ----KKEVLEQMAHILTEEAEKLDIPFQFNQ-IVSKLEDIDIEKLRVKT 236 **************************************************....9**************************.7999************* PP GRAS 199 gEalaVnlvlqlhrll......................................................desvsles..erdevLklvkslsPkvvvv 241 gEala++lvlqlh+ll ++s++l+ + d++L+++++lsPkv+ v Achn012501 237 GEALAISLVLQLHTLLatddellrkkspvtpknangfnlqrslqmnqgtlgellekdlvngyspshvsasSSSLPLNAslRMDSFLNALWGLSPKVMLV 335 ********************************************************************9855555555568899*************** PP GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +eq+++hn+++++er++e+l++y+alfd+le++lpr+s er kvE++l+g+ei+n+++cegaer+ rhe+lekW +rl+ aGF++vpls++ + qa++l Achn012501 336 TEQDSNHNGSTLMERLSESLYFYAALFDCLESTLPRTSLERLKVEKMLFGEEIKNIISCEGAERKRRHEKLEKWVQRLDLAGFGSVPLSYYSTLQARRL 434 *************************************************************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+ ++ dgyr++ee+g+++++W+dr+L+svSaWr Achn012501 435 LQSYSCDGYRINEENGCVMIYWQDRALFSVSAWR 468 *********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.75 | 20 | 448 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-140 | 46 | 468 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MFQDDGSSSV TSSPLQAFPM MSLSPGFGSP YPWLRELKSE ERGLYLIHLL LACANYVATG 60 SLENANITLD QISQLASPDG DTMQRIASYF TEALAERILK NWPGIYKALH STRISLVSEE 120 ILVRKLFYES FPFLKVAFVI TNQAIIEAME GEKMVHIIDL NAAEPAQWRA LLQDLSSRPE 180 GPPHLRITGV HQKKEVLEQM AHILTEEAEK LDIPFQFNQI VSKLEDIDIE KLRVKTGEAL 240 AISLVLQLHT LLATDDELLR KKSPVTPKNA NGFNLQRSLQ MNQGTLGELL EKDLVNGYSP 300 SHVSASSSSL PLNASLRMDS FLNALWGLSP KVMLVTEQDS NHNGSTLMER LSESLYFYAA 360 LFDCLESTLP RTSLERLKVE KMLFGEEIKN IISCEGAERK RRHEKLEKWV QRLDLAGFGS 420 VPLSYYSTLQ ARRLLQSYSC DGYRINEENG CVMIYWQDRA LFSVSAWRCR R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-41 | 46 | 468 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028094205.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_028094206.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_028106666.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_028106667.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2R6PFT4 | 0.0 | A0A2R6PFT4_ACTCH; Scarecrow-like protein | ||||
STRING | EOY32806 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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