PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn011941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 340aa    MW: 37516.1 Da    PI: 5.1664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn011941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19120169255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp     r +r +lg+++taeeAa+ +++a+ +l+g
  Achn011941 120 KYRGVRRRP-WGKFAAEIRDPM----RrTRLWLGTYDTAEEAAAVYDNAAIRLRG 169
                 8********.**********83....46*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.00E-32119176No hitNo description
PfamPF008474.1E-12120169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-29120177IPR001471AP2/ERF domain
SMARTSM003804.1E-36120183IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-21120177IPR016177DNA-binding domain
PROSITE profilePS5103223.275120177IPR001471AP2/ERF domain
PRINTSPR003675.2E-10121132IPR001471AP2/ERF domain
PRINTSPR003675.2E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MLSKPKLRRL APNKNSLTRD EHKSVTKKLI KPSNLKPRKA SGGPKVLDYT SGVAPRVVRI  60
SVTDPDATDS SGDEEAQFLG RQRVKRYVNE ISIESAANKS GVKRKGMKKA AAASGGGFQK  120
YRGVRRRPWG KFAAEIRDPM RRTRLWLGTY DTAEEAAAVY DNAAIRLRGP DALTNFVTPP  180
PKDAADVNMT SVSGYESGYE SRSLSSPTSV LRFTSLSTEE TKPSKPVQED PVIPEPIQGS  240
EEFQDETSLS TQIVDYLPMD LSLVDDFFNF ESSEPILFNE TPTLPNDLLR DDYLSDVFMD  300
SGNDFGSSLS IWQANDYFQD LGVDLFTSDP LMALSLPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19119176462ATERF1
3gcc_A1e-19119176462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097450.11e-108ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2R6Q9550.0A0A2R6Q955_ACTCH; Ethylene-responsive transcription factor
STRINGEOY234437e-95(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-53cytokinin response factor 4