PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn011121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 350aa    MW: 39492.1 Da    PI: 6.2492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn011121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074216238123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C k+F++   L  H  +H
  Achn011121 216 YKCETCFKVFKSYQALGGHRASH 238
                 9************9999998887 PP
2zf-C2H211.50.00094270292123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C ++Fs+   L  H r+H
  Achn011121 270 HECPVCFRVFSSGQALGGHKRSH 292
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.11426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224426IPR007087Zinc finger, C2H2
PfamPF139121.6E-5426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.14216238IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074216243IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-8216238No hitNo description
PfamPF139122.5E-9216240IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-8265292No hitNo description
SMARTSM003550.19270292IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39270299IPR007087Zinc finger, C2H2
PfamPF139124.5E-11270292IPR007087Zinc finger, C2H2
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEKHKCKLCF KRFVNGRALG GHMRSHLMNL YAPPKTEQEQ PSGLGEEAES AQSSSSSSDD  60
EEENDLEKGL MLCYGLRENP KKSVRLEDPE FNFAVDAGSV ILQDRESETE SSKNPTRRRS  120
KRVRKLGIPQ QFHDQKQQFL KKPKSGKTES CWVDPEPASS ISDASPEEEV AYCLMMLSRD  180
KWMREKEEEE LDEDPETEED EFSKLKPIKP RPRPKYKCET CFKVFKSYQA LGGHRASHKK  240
TQPNNHGNQT MASQSEPEIR NVSVSEEKIH ECPVCFRVFS SGQALGGHKR SHVLNGSNPT  300
TSFSHSKPQL KSGETLIDLN LPAPIDDDEI SQIELSAVSD SEFVNPIKH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074031.11e-127zinc finger protein ZAT9-like
TrEMBLA0A2R6R9B80.0A0A2R6R9B8_ACTCH; Zinc finger protein
STRINGVIT_15s0021g02720.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-65C2H2-like zinc finger protein