PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn008541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 482aa    MW: 53723.7 Da    PI: 4.6514
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn008541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.64.2e-2261272128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 p+Gf F+Ptd+e++++yL kk  g++l+l+ vi+e d+y+ e   L + +++ e+++yfF++ +kky +g+++ r++ +++W++   d  + + +++++
  Achn008541   6 PVGFLFRPTDKEVIQHYLLKKQIGEELPLNGVIQERDVYSEE--VLSEVFQSFETHVYFFTQLKKKYLNGSNHDRTVGKATWRSESVDD-IRVDEKTVI 101
                 89***************************99********987..57667788889****************************988765.55559999* PP

         NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                 g k++L +   +  +    dW m+ey+l
  Achn008541 102 GKKRVLDYI--NPGSVGDRDWSMKEYSL 127
                 ********9..34444588*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-223148IPR003441NAC domain
PROSITE profilePS5100526.4385149IPR003441NAC domain
PfamPF023651.3E-136127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAIKFPVGFL FRPTDKEVIQ HYLLKKQIGE ELPLNGVIQE RDVYSEEVLS EVFQSFETHV  60
YFFTQLKKKY LNGSNHDRTV GKATWRSESV DDIRVDEKTV IGKKRVLDYI NPGSVGDRDW  120
SMKEYSLDGV LLELPQTSSD YVVCLLEKKE RAIKRDRQKN MQSKRNAPVN TPSGCFNNKR  180
IKLSSKQNQQ MENRQTPLVD EQVGLINREA GVETIEQIMQ YLLEPDSSMV DVDEENVERV  240
MQYLLEPDSS LDRMPPLMEA KPAPTVNEDG GYTSGESEAR MQPSIHDQSL PSSNREYAVL  300
DYINSLASAP EVTAIENDVG IREQPSINKK RRLLLVASIH GEAVESMVNE NVAVASLPPP  360
ALAAFPAPTV NEDGGYPSGE NEVRMQPSIH DQSLPSSNRE YAVLDYINSL ASAPEVTAIE  420
NDVGILEQPS INKKRRLVLV ASIQGEAVEP MVNENVAVAS LPPPALAAFP EGLRQTRFAL  480
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-14315013169Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6QPD51e-141A0A2R6QPD5_ACTCH; NAC domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-16NAC domain containing protein 32