PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn007901

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 390aa MW: 43135.1 Da PI: 6.3603

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn007901	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.7e-09	247	294	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Achn007901 247 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 294 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-15	241	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.16E-11	241	298	No hit	No description
PROSITE profile	PS50888	15.663	243	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	243	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-6	247	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-10	249	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEKENSILTT TWNSSSFGME IEYNQVNCGF LNPLNWDNST MGQSDPFESD TSCYNTPLNS 60 PQKLNLSMLM LPDHHARGKF PIPGNQFPPL PVDPARFSLD SQFGLREPEF QSVNFSRASS 120 DQSLKLAGTI MGVQENAEFG DSREESSVSE QIPGGETGVR SGQSDDAIAR KRKSIPRGKA 180 KSPAKDAKVT ESDESNAVNK RRKLDENEKD VGKSKSEEIE NGKSAKPQEP PKDYIHVRAR 240 RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEMF 300 PCRGSAPHGI YPLVTTSSAF SYEYQSPRNP ITKLPLIHGF GDAAPASQHS TLWEDDLQSV 360 VQMGFGQNQA HDFHGDAGKM ATGHMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEKENSILTT TWNSSSFGME IEYNQVNCGF LNPLNWDNST MGQSDPFESD TSCYNTPLNS  60
PQKLNLSMLM LPDHHARGKF PIPGNQFPPL PVDPARFSLD SQFGLREPEF QSVNFSRASS  120
DQSLKLAGTI MGVQENAEFG DSREESSVSE QIPGGETGVR SGQSDDAIAR KRKSIPRGKA  180
KSPAKDAKVT ESDESNAVNK RRKLDENEKD VGKSKSEEIE NGKSAKPQEP PKDYIHVRAR  240
RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEMF  300
PCRGSAPHGI YPLVTTSSAF SYEYQSPRNP ITKLPLIHGF GDAAPASQHS TLWEDDLQSV  360
VQMGFGQNQA HDFHGDAGKM ATGHMKVEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028074625.1	1e-130	transcription factor bHLH62-like
Swissprot	Q9SRT2	6e-53	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A2R6RRH7	0.0	A0A2R6RRH7_ACTCH; Transcription factor bHLH62 like
STRING	POPTR_0002s23650.1	1e-105	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]