PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn007791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 507aa    MW: 56006.8 Da    PI: 6.9651
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn007791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093093412254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 ++yp+ +++  LAk++gL+ +qV++WF N R +
  Achn007791 309 HPYPTDTDKIMLAKQTGLSRNQVSNWFINARVR 341
                 89*****************************88 PP
2BELL993.9e-32177245472
        BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 e  +kk++L+s+l+eV++rYk y++q+qtv++sFe vagl +a+p+++lA ka+S+hFr+Lk+ai++q+
  Achn007791 177 EQLRKKSRLISMLDEVYRRYKYYYQQMQTVVASFESVAGLSNAAPFANLAIKAMSKHFRSLKNAITDQL 245
                 5568**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-47114243IPR006563POX domain
PfamPF075264.1E-38119242IPR006563POX domain
PROSITE profilePS5007111.985282345IPR001356Homeobox domain
CDDcd000861.68E-12285346No hitNo description
SMARTSM003899.3E-10285349IPR001356Homeobox domain
SuperFamilySSF466893.42E-17287352IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27288349IPR009057Homeodomain-like
PfamPF059206.6E-19302341IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VGGCVDNLQG CAGLLPAYDP SLIGPDLLTP IQGINGNSLL  60
FSPQNLRFFD QSFNDGEVLV YKPEPLSLSL SSSHNPYVIG SDLSRSSVPL GPFTGYSSIL  120
KGSRFLRPAQ QLLEEICEVG RGGYAENVAA ETGLMEGESL GGSGVGDVAV SGGDGGEQLR  180
KKSRLISMLD EVYRRYKYYY QQMQTVVASF ESVAGLSNAA PFANLAIKAM SKHFRSLKNA  240
ITDQLQFLSK AQNYRKDESP RFGNSDNVYS QRPIHNSGFL DQPVWRPQRG LPERAVTVLR  300
SWLFDHFLHP YPTDTDKIML AKQTGLSRNQ VSNWFINARV RLWKPMVEEI HMLETQQTKK  360
PLQREEQSVD GPSDHHLPTP TSLPSENPSA STQRAQDLPS KRTRDEFPDI SMGTEDPVRL  420
SYQNLSRHQH VGVGTSTRGG SGGVSLTLGL YQNSGLGLSE PFPMNAARRF GLDTNSEGYV  480
VGSFEDQNRQ FGRDVIGGQF LHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-15291349159Homeobox protein Meis2
5bng_B2e-15291349159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056974.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-121BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2R6RRJ30.0A0A2R6RRJ3_ACTCH; BEL1-like homeodomain protein 9
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.16e-69BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]