PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn006961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HB-other | ||||||||
Protein Properties | Length: 134aa MW: 15428.4 Da PI: 9.1904 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k t++t+eq+e+Le++F+++++p+ ++r+e+ ++ +L+ +q+k+WFqNrR +ek+ Achn006961 25 KYTRYTAEQVEVLEKVFAECPKPNFSDRQEMIHNYsilsNLEPKQIKIWFQNRRCREKQ 83 679*****************************999999*******************97 PP | |||||||
2 | bZIP_1 | 26.7 | 1.2e-08 | 77 | 122 | 18 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 rr+R++ k+e +L+ k+L+a Nk Lk+e+++l+k+v+ l e+ Achn006961 77 RRCREKQKKEANNLQSVNKKLTAANKLLKEENDRLQKQVSHLVYEN 122 9**************************************9886655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.8E-17 | 15 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.2E-15 | 22 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 24 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.26E-15 | 25 | 85 | No hit | No description |
PROSITE profile | PS50071 | 15.71 | 25 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-16 | 25 | 83 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 4.26E-5 | 77 | 116 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.5E-5 | 84 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MGCSHGGRGS KRGNGSGDPD GDCGKYTRYT AEQVEVLEKV FAECPKPNFS DRQEMIHNYS 60 ILSNLEPKQI KIWFQNRRCR EKQKKEANNL QSVNKKLTAA NKLLKEENDR LQKQVSHLVY 120 ENEYIRQQLE NIL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028126794.1 | 7e-66 | homeobox-leucine zipper protein HOX32-like isoform X1 | ||||
Refseq | XP_028126795.1 | 7e-66 | homeobox-leucine zipper protein HOX32-like isoform X1 | ||||
Refseq | XP_028126796.1 | 7e-66 | homeobox-leucine zipper protein HOX32-like isoform X1 | ||||
Swissprot | A2XK30 | 1e-53 | HOX32_ORYSI; Homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 1e-53 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A2R6RTN6 | 3e-93 | A0A2R6RTN6_ACTCH; Homeobox-leucine zipper protein | ||||
STRING | Pavir.Ia01087.1.p | 2e-53 | (Panicum virgatum) | ||||
STRING | Si034228m | 2e-53 | (Setaria italica) | ||||
STRING | Sb01g013710.1 | 2e-53 | (Sorghum bicolor) | ||||
STRING | GRMZM2G023291_P01 | 9e-56 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 2e-44 | homeobox gene 8 |
Publications ? help Back to Top | |||
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