PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn006961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HB-other
Protein Properties Length: 134aa    MW: 15428.4 Da    PI: 9.1904
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn006961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-182583357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k t++t+eq+e+Le++F+++++p+ ++r+e+ ++     +L+ +q+k+WFqNrR +ek+
  Achn006961 25 KYTRYTAEQVEVLEKVFAECPKPNFSDRQEMIHNYsilsNLEPKQIKIWFQNRRCREKQ 83
                679*****************************999999*******************97 PP

2bZIP_126.71.2e-08771221863
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 rr+R++ k+e  +L+   k+L+a Nk Lk+e+++l+k+v+ l  e+
  Achn006961  77 RRCREKQKKEANNLQSVNKKLTAANKLLKEENDRLQKQVSHLVYEN 122
                 9**************************************9886655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-171585IPR009057Homeodomain-like
SMARTSM003893.2E-152288IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-192483IPR009057Homeodomain-like
CDDcd000862.26E-152585No hitNo description
PROSITE profilePS5007115.712584IPR001356Homeobox domain
PfamPF000463.4E-162583IPR001356Homeobox domain
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
CDDcd146864.26E-577116No hitNo description
Gene3DG3DSA:1.20.5.1706.5E-584118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGCSHGGRGS KRGNGSGDPD GDCGKYTRYT AEQVEVLEKV FAECPKPNFS DRQEMIHNYS  60
ILSNLEPKQI KIWFQNRRCR EKQKKEANNL QSVNKKLTAA NKLLKEENDR LQKQVSHLVY  120
ENEYIRQQLE NIL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126794.17e-66homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_028126795.17e-66homeobox-leucine zipper protein HOX32-like isoform X1
RefseqXP_028126796.17e-66homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotA2XK301e-53HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST11e-53HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2R6RTN63e-93A0A2R6RTN6_ACTCH; Homeobox-leucine zipper protein
STRINGPavir.Ia01087.1.p2e-53(Panicum virgatum)
STRINGSi034228m2e-53(Setaria italica)
STRINGSb01g013710.12e-53(Sorghum bicolor)
STRINGGRMZM2G023291_P019e-56(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.12e-44homeobox gene 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]