PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn006581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 391aa    MW: 44973 Da    PI: 10.2654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn006581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-1725109898
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + v  ++ l +p kf +++g++   sk  tl+ ++gr W+v +  +k+ ++++l +GWkeF + + +  g f+vF ++g+s+f  +v +f+
  Achn006581  25 PTVIHHNKLGIPEKFSKKYGNE--LSKFATLTVPNGRIWQVGV--EKSENMFWLHDGWKEFSEHHSISCGFFLVFNYEGNSKF--NVLIFD 109
                 67889999***********955..8999***************..**********************************9999..898887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2213111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2213111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-1718109No hitNo description
PROSITE profilePS5086313.42218111IPR003340B3 DNA binding domain
SMARTSM010193.8E-1519111IPR003340B3 DNA binding domain
PfamPF023622.2E-1425109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-8299358IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-9300360IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-6305367No hitNo description
PROSITE profilePS508636.033307390IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGQKESDRRP NFSARFTSFY KIILPTVIHH NKLGIPEKFS KKYGNELSKF ATLTVPNGRI  60
WQVGVEKSEN MFWLHDGWKE FSEHHSISCG FFLVFNYEGN SKFNVLIFDL SASEIHYPGN  120
NVTISEKPDR GKGHSVSKKR EIEVDKSVPS EDNFFCQRLD QWRSSNRRNR SLLPNLFELA  180
PEFSMRINKH KILPRNKRFK MEDPGENVPM SCEGKQRARE IRNSRGSMMD ELGKDKRNRN  240
EKLLSSDAVN KGIDSSGKQL KEKQDEDAEL LGVNKSSKNA TMQSFKTQER EKMGDSSTMF  300
EPENPFFKVT LKLYNVHNSF CLGVPAEFSR NYLNRVKKFV KLEVSHGRQW KVGFVRVSGG  360
RTPIVSSDSI SDGALELPFH LSVNRFRFPN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052910.15e-58B3 domain-containing transcription factor VRN1-like
RefseqXP_028052911.15e-58B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2R6RBX90.0A0A2R6RBX9_ACTCH; B3 domain-containing transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-30B3 family protein