PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn006571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 464aa    MW: 52818.9 Da    PI: 8.8985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn006571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88e-1331112896
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 s+    + l +p kf+++ g++   +   tl++++g  W+v l  +k ++++++t+GW eFv+ + +++g  ++F+++g+s+f  +v +
  Achn006571  31 SSIIHDRKLKIPGKFTKKLGNE--LPAIATLTTPNGC-WQVGL--KKIDDKVWFTNGWHEFVEHQSIRVGYLLIFTYEGNSSF--RVNI 112
                 555666789*******999855..8888999998886.*****..***********************************999..5554 PP
2B357.91.8e-183624391899
                 --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +p +fae++ +g++     +tl+ ++g++W v++ +r +s    l+kGW eFv++n+L+egD+++F+l++ +e  l+v++fr+
  Achn006571 362 MPASFAEKYlSGIQG---FITLQVSKGEKWPVRCMWRDGSA--KLSKGWPEFVSENKLEEGDVCIFELIRVEEIVLNVTIFRA 439
                 699******855533...5***************7766665..5*************************999999*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1821114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-1423114No hitNo description
SuperFamilySSF1019368.04E-1823114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.02624116IPR003340B3 DNA binding domain
SMARTSM010194.5E-1225116IPR003340B3 DNA binding domain
PfamPF023626.0E-1031112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-22326439IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-21327438IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-18332438No hitNo description
SMARTSM010195.5E-14352440IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183362440IPR003340B3 DNA binding domain
PfamPF023623.2E-17362439IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGLQGEVADT DRRRLSFPAK ESSIFYRLIV SSIIHDRKLK IPGKFTKKLG NELPAIATLT  60
TPNGCWQVGL KKIDDKVWFT NGWHEFVEHQ SIRVGYLLIF TYEGNSSFRV NIYNMATAEI  120
KYQGNTLTSN EGPHYNSRCP VFYRGEAENN DLVDIFDSIS RPPWQTLASG ENKVFDGTVD  180
DRKASKSYDP RLLQNLEKAP VPYAQHAGYS FNGTEITNSK YKSNVGNSHV DIVRSAARST  240
RDIGIQCTSS ELMKFEYEFR LHSLNQRPEM TRKRKRGVGP HELESSAAYG SEVQSPRSET  300
SCRGFLRRSR VVTPEEKEKV LGESKMFQSE NPFCRVILRR SYVYKGIGLI FYFRIFVPVQ  360
HMPASFAEKY LSGIQGFITL QVSKGEKWPV RCMWRDGSAK LSKGWPEFVS ENKLEEGDVC  420
IFELIRVEEI VLNVTIFRAV EDGEPVNQLP VEHLGRTGQL TFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-3830844123144B3 domain-containing transcription factor VRN1
4i1k_B2e-3830844123144B3 domain-containing transcription factor VRN1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102012.10.0B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_028102013.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2R6RC290.0A0A2R6RC29_ACTCH; B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-41related to vernalization1 1