PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn006131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family G2-like
Protein Properties Length: 337aa    MW: 38164.1 Da    PI: 5.8178
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn006131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31191246156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 k+r++W+peLH+rFv+a++qLGG+++AtPk+i+el++v+gLt++++kSHLQkYRl+
  Achn006131 191 KQRRCWSPELHRRFVSALQQLGGPQVATPKQIRELIQVDGLTNDEIKSHLQKYRLH 246
                 79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.632188248IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-27189249IPR009057Homeodomain-like
SuperFamilySSF466891.12E-16189249IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-26191246IPR006447Myb domain, plants
PfamPF002491.7E-7193244IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTKIALKKDS SPATTYRILI EERSEGQTKN LGMGSIPPEL SLDIRPTFVP KTISCFLGEI  60
TTIGKISERM FRIDDFVKRL EDEMRKIDGF KRELPLSMML LNDAIVILKE ESMQCRTTNI  120
EPVLEEFIPL KKNCDEEEKI EAIKVKDNKD KVDWMSSVQL WNTHDSKTMD SKKQNSLKAG  180
PPQPQYQNAR KQRRCWSPEL HRRFVSALQQ LGGPQVATPK QIRELIQVDG LTNDEIKSHL  240
QKYRLHARKP PAAANKSTVN FRGLWLSPPQ DDRFGESAKQ SNSKSESPQG PLQLDGGGTC  300
TTGEEEGDDG DDDDTDDEDE KSESYGWKIH IPKYGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024979828.11e-100transcription factor HHO6-like isoform X2
TrEMBLA0A2R6RBY42e-96A0A2R6RBY4_ACTCH; Myb family transcription factor EFM like
STRINGPOPTR_0005s14120.14e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.12e-57G2-like family protein