PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn004071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 33911.3 Da PI: 7.2544 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.9 | 5.3e-34 | 16 | 70 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Achn004071 16 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 70 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.688 | 13 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-32 | 14 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-18 | 14 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-25 | 16 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 18 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-23 | 115 | 161 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MIGGNSLDNN PSLSSKQRLR WTHELHERFV DAVAQLGGPD RATPKGVLRV MGVQGLTIYH 60 VKSHLQKYRL AKYLPDSSCD DQFIDTCLKL MMQGNKADKK ESEDMLSSLD GSSGMQITEA 120 LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ RLGGVLSEVP GSGASAPESD 180 TKTDPATPAV PTLDSPLLDN KATKERALAK SLSIDESLSS PREPLTPDSG CRGSGSPKGS 240 RPVKKQRVSM GGAYAKPETE IILTHGILDS SLSPPYQQPH SVFLASEQFN HPSGISLGNE 300 DQFGNVSGSN L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028095467.1 | 1e-161 | uncharacterized protein LOC114295433 | ||||
Swissprot | Q9SJW0 | 1e-117 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2R6QAU0 | 0.0 | A0A2R6QAU0_ACTCH; Myb family transcription factor | ||||
STRING | VIT_00s0475g00040.t01 | 1e-154 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2796 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-103 | G2-like family protein |