PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn003171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 779aa MW: 85565.5 Da PI: 6.5566 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 5 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r+++ +++ +++ +q+kvWFqNrR +ek+ Achn003171 5 KYVRYTPEQVETLERVYSECPKPSSMRRQQIIRECpilsNIEAKQIKVWFQNRRCREKQ 63 6789*****************************************************97 PP | |||||||
2 | bZIP_1 | 20.1 | 1.4e-06 | 57 | 99 | 18 | 60 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v++l Achn003171 57 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLV 99 9***************************************985 PP | |||||||
3 | START | 161.9 | 4.8e-51 | 153 | 361 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ +Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l +i + g ++l ++++ Achn003171 153 IAEETLAEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSAIPTEngGMIELLYMQT 250 68999*****************************************************.8888888888***************99888********** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+ Rdf ++Ry+ l++g++v++++S++s + p+ s +vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l++s+ + ++ Achn003171 251 YAPTTLAVaRDFQTLRYTTNLQDGSLVVCERSLTSSTGGPTgppASCFVRAEMLPSGYLIRPCDGGGSIIHIVDHIDLDAWSVPEVLRPLYESSKILAQ 349 ****99888***************************99999898999**************************************************** PP HHHHHHTXXXXX CS START 194 ktwvatlqrqce 205 k++va+l++ ++ Achn003171 350 KMTVAALRHVRQ 361 *******98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.467 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-14 | 2 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.45E-15 | 5 | 65 | No hit | No description |
Pfam | PF00046 | 4.4E-16 | 5 | 63 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 5 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 7 | 63 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.61E-6 | 57 | 96 | No hit | No description |
PROSITE profile | PS50848 | 25.118 | 143 | 371 | IPR002913 | START domain |
CDD | cd08875 | 1.87E-66 | 147 | 363 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.2E-21 | 150 | 357 | IPR023393 | START-like domain |
SMART | SM00234 | 7.4E-47 | 152 | 362 | IPR002913 | START domain |
Pfam | PF01852 | 9.8E-49 | 153 | 361 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.61E-36 | 153 | 364 | No hit | No description |
Pfam | PF08670 | 1.6E-32 | 680 | 777 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MDSSKYVRYT PEQVETLERV YSECPKPSSM RRQQIIRECP ILSNIEAKQI KVWFQNRRCR 60 EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY DNGYMRTQLH TVSAAATTDA 120 SCESVVLSDQ HQQQNPTPHL QRDANNPASL LAIAEETLAE FLSKATGTAV NWVQMIGMKP 180 GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRP SWFRDCRCLD VLSAIPTENG 240 GMIELLYMQT YAPTTLAVAR DFQTLRYTTN LQDGSLVVCE RSLTSSTGGP TGPPASCFVR 300 AEMLPSGYLI RPCDGGGSII HIVDHIDLDA WSVPEVLRPL YESSKILAQK MTVAALRHVR 360 QIAQETSGEI QYSGGRQPAV LRTFSQRLCR GFNDAINGFM DDGWSVMGSD GVEDVTIAIN 420 SSPSKFPGSQ YNTLSVLPSF GGVLCAKASM LLQNVPPAVL VRFLREHRPE WADYGIDAYS 480 AACLKASPYA FPCARPSGFP SSPVILPLAH TVEHEELCSG VDDNAAGVCA QLVFAPIDES 540 FADEAPLLPS GFRVIPLDPK SDDPSVTRTL DLASTLEVGR GGVRRADEDS NSYNHRSVLT 600 IAFQFTFESH FRDNVAAMAR QYVRSVVGSV QRVAMAIAPS PLGSHLGPKP LPASPEAHTL 660 AQWISRSYRL LTQCSKLHQQ ASAVFTFANQ AGLDMLETTF VALQDIMLDK VLDEAGRRIL 720 LSEFSKIMQQ GFAYLPTGIC VSSMGRPVSY DQAVAWKVLD DNDSNHCLAF MFTNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB938211 | 0.0 | AB938211.1 Sarracenia purpurea PHB mRNA for phabulosa, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028114332.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | A2XK30 | 0.0 | HOX32_ORYSI; Homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A2R6QAM2 | 0.0 | A0A2R6QAM2_ACTCH; Homeobox-leucine zipper protein like | ||||
STRING | VIT_10s0003g04670.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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