PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn002691

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 343aa MW: 39918.7 Da PI: 6.2388

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn002691	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	1e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s k Achn002691 7 VPPGFRFHPTDEELVDYYLRKKIASRRIDL-DVIKDVDLYKIEPWDLQElcKIGTEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYS-K 103 69**************************.9***********954555554445**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg++ktLv+y+grap+g+k+dW+mheyrle Achn002691 104 HSLVGMRKTLVYYRGRAPNGQKSDWIMHEYRLE 136 899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-59	5	169	IPR003441	NAC domain
PROSITE profile	PS51005	58.738	7	169	IPR003441	NAC domain
Pfam	PF02365	8.5E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SRRIDLDVIK DVDLYKIEPW DLQELCKIGT 60 EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHSLVGMR KTLVYYRGRA 120 PNGQKSDWIM HEYRLETSEN GTPQATSAFR AYMPDNNEEG WVVCRVFKKR LPSTRTTSEL 180 DSPCWYEDQV SFMPDFDSPR PMPHPYSTSY HPHYSCKREL ELHFNVPHDP FIQLPQLESP 240 SVARLQEDQS LKQSINQHNI DSICGNNEQA VDQLTDWRVL DKFVASQLSQ EDEFKGRNYS 300 SSASFQVAEH MNTLLNDTVE REDICSEYAL MATPSCPIDL WK*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SRRIDLDVIK DVDLYKIEPW DLQELCKIGT  60
EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKHSLVGMR KTLVYYRGRA  120
PNGQKSDWIM HEYRLETSEN GTPQATSAFR AYMPDNNEEG WVVCRVFKKR LPSTRTTSEL  180
DSPCWYEDQV SFMPDFDSPR PMPHPYSTSY HPHYSCKREL ELHFNVPHDP FIQLPQLESP  240
SVARLQEDQS LKQSINQHNI DSICGNNEQA VDQLTDWRVL DKFVASQLSQ EDEFKGRNYS  300
SSASFQVAEH MNTLLNDTVE REDICSEYAL MATPSCPIDL WK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-48	6	170	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028127638.1	1e-178	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-137	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2R6QK34	0.0	A0A2R6QK34_ACTCH; NAC domain-containing protein
STRING	VIT_02s0154g00020.t01	1e-174	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-140	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]